Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C10
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    24   2.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    24   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.9  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 IDERTAKNRFT-SEEKRALDXLHKDIYQEIRHAAEAHRQTR 371
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 315  HKDIYQEIRHAAEAHRQTRKHIRN 386
            H+DI+      AE H ++R+  RN
Sbjct: 1114 HEDIFGITLRTAEVHNRSRETARN 1137


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 199 GNSSATGIVGGTV 161
           G+S+  G+VGGT+
Sbjct: 8   GSSAGVGVVGGTI 20


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 554 NCCITCVRSIMRCTVVAAASCG 489
           N  + C  SI    VV+A  CG
Sbjct: 153 NGTVNCTSSIASSGVVSAGECG 174


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 323  YLSGNQTCC*SPQADKKTHPQLDQAXHDYDXYL*RVREXCXTSYW*R 463
            ++ GNQ        D+   P+L +A  D D  L +++    +S W R
Sbjct: 1863 FVGGNQGNVVPGNGDRSDRPELSEAECDIDS-LKKLKLGLRSSLWSR 1908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 323  YLSGNQTCC*SPQADKKTHPQLDQAXHDYDXYL*RVREXCXTSYW*R 463
            ++ GNQ        D+   P+L +A  D D  L +++    +S W R
Sbjct: 1859 FVGGNQGNVVPGNGDRSDRPELSEAECDIDS-LKKLKLGLRSSLWSR 1904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,858
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)