Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C08
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   3.4  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   5.9  

>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 217 LALGQWFRKWRVDINPAKSTAVLFQRGNSPLISSRIXRRNITPPITLFSQS 369
           +A+G +F  W + +NP  ++A +     S L SS + RR   P   +FS++
Sbjct: 814 IAMG-FFLPWGIYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSLIFSEA 863


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 109 IPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALALGQWFRKWRVDINPAKSTAVLF 288
           IP +PPT+  + A    V  +++N +  A  L  A + L    +     ++PAKS AV+ 
Sbjct: 455 IPSTPPTKKPINA----VLDAAKNSA--AKDLHLAKMKLNN--KNDESSLSPAKSHAVIT 506

Query: 289 QRGNSPLISS 318
           Q    PLIS+
Sbjct: 507 QAPKIPLIST 516


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +1

Query: 244 WRVDI-NPAKSTAVLFQRGNSPLISSRIXRRNITPPITLFSQSIPWARKVKYLGVTLDAS 420
           W  D+ + A ST + F +  +     ++  + +T  + +FS SI  +  + ++   L+  
Sbjct: 589 WESDVWSLASSTLIDFVQHRNQHDMKKLASK-MTTSLPVFSTSITRSDVLHFVTRLLNLR 647

Query: 421 MTFRPHIKSVRDRAAFILSRLYPMICKRSKMSLRNKVTLYK 543
               P+ K +     F L+ + P +  R   SLRN   LYK
Sbjct: 648 SRLVPYQKFLLQ--TFPLNEVSPSLDPRISKSLRNLQDLYK 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,032
Number of Sequences: 5004
Number of extensions: 66898
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)