Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C08
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0578 - 20753834-20754418                                         32   0.50 
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    32   0.50 
06_03_0974 - 26459747-26460190,26460278-26460946                       31   1.5  
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    29   3.5  
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313...    29   6.2  
01_05_0695 + 24360307-24361050,24362913-24363094,24363177-243633...    29   6.2  
07_01_0474 + 3579653-3579821,3580407-3580744                           28   8.2  
04_04_1672 - 35242468-35243235,35243481-35243645                       28   8.2  
01_06_1724 - 39452858-39454309                                         28   8.2  

>12_02_0578 - 20753834-20754418
          Length = 194

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = +1

Query: 121 PPTQLALFADDTTVYYSSRNKSLIASKLQSAALALGQWFRKWRVDINPAKSTAV-LFQRG 297
           PP  L L  +      SS   S IA++L+SAA A    F   R  + P +  AV   +R 
Sbjct: 34  PPLALTLAVEIVLAPCSSL--SAIAAELRSAAAAAPD-FLLTRRHLRPLRRVAVDPVRRS 90

Query: 298 NSPLISSRIXRRNITPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSV 450
            SP+         I     +F +S+   R+++ LGV+   S +F P + S+
Sbjct: 91  ASPVDRRSTVALVIPSRAAVFLRSVRRFRRLRCLGVSRGPSPSFPPFLLSL 141


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +1

Query: 184 SLIASKLQSAALALGQWFRKWRVDINPAKSTAVLFQRGNSPLISSRIXRRNITPPITL 357
           S++AS  +S   ALG  F+K+       K   +LF   NSP++ +R+  + + PP+ L
Sbjct: 437 SIMASLERSTYEALGSDFQKYN-----QKLRQLLFNIKNSPVLRNRLMNKELDPPVLL 489


>06_03_0974 - 26459747-26460190,26460278-26460946
          Length = 370

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 664 GAPTANLQKRDCRGLEGVYVCAGRVSEHPHSRKS*R--XLCKFCKVSPCS 521
           GA  A+     CRG  GVY+C    +   H+R +     +C+ C+V+P +
Sbjct: 15  GACEASPAAVHCRGCGGVYLCTACDARPGHARAAHERVWVCEVCEVAPAA 64


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 571 ASVGVRSRGPHTHRHPPIPYNPAFA 645
           +S GV SR    H HP  P NP+F+
Sbjct: 33  SSFGVSSRAAADHHHPSPPSNPSFS 57


>05_01_0397 -
           3129679-3130144,3130655-3131104,3132215-3132273,
           3133136-3133305,3134655-3134771,3134980-3135166
          Length = 482

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 586 RSRGPHTHRHPPIPYNPAFAG*PSGLRG 669
           RS G  T   PP+P NPAF   P G  G
Sbjct: 370 RSGGMRTAPPPPLPENPAFCLFPPGSSG 397


>01_05_0695 +
           24360307-24361050,24362913-24363094,24363177-24363332,
           24363413-24363749
          Length = 472

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +1

Query: 220 ALGQWFRKWRVDINPAKSTAVLFQRGNSPLISSRIXRRNITPPITLFSQSIPW 378
           ALG W   W VD N   +   +F R  SP   S     N T PIT  ++ +PW
Sbjct: 331 ALGTW-ASW-VDQNVDSARTRVFFRSISPEHKSENWCYNQTSPITDETKIVPW 381


>07_01_0474 + 3579653-3579821,3580407-3580744
          Length = 168

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 657 GAPWFVXNLDLHDDLGLESITEIXEGQRPNXTS 755
           G  WF  N+D H +LG++ + ++ +   P   S
Sbjct: 101 GKRWFFCNVDNHCELGMKLVVDVADPNAPAPAS 133


>04_04_1672 - 35242468-35243235,35243481-35243645
          Length = 310

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 317 PVLXGEIS--LPRLLSLVNPYPGPGRSSTWAL 406
           PV  G++    P  L LVN  PGPG SS  AL
Sbjct: 125 PVPLGQLDSLAPAPLRLVNQLPGPGTSSVQAL 156


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 QVPGRYPGCIDDIPPAYKISP*PCRVY 470
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,444,331
Number of Sequences: 37544
Number of extensions: 511464
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)