Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C08
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro...    32   3.0  
AY957526-1|AAX57550.1|  128|Homo sapiens anti-oxLDL immunoglobul...    31   7.0  
BC117303-1|AAI17304.1| 1021|Homo sapiens dynein heavy chain doma...    30   9.2  
BC117301-1|AAI17302.1| 1021|Homo sapiens dynein heavy chain doma...    30   9.2  
AY271826-1|AAQ01753.1|  417|Homo sapiens ZYG-11A early embryogen...    30   9.2  
AK057314-1|BAB71423.1| 1021|Homo sapiens protein ( Homo sapiens ...    30   9.2  

>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
           protein.
          Length = 1798

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 537 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 448
           +C  V  G+F P  DH +   EN RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAENTRGQVLD 580


>AY957526-1|AAX57550.1|  128|Homo sapiens anti-oxLDL immunoglobulin
           heavy chain variable region protein.
          Length = 128

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 139 LFADDTTVYYSSRNKSLIASKLQSAALALGQWFRKW 246
           L +DDT VYY +R++ +I  +     L  G WF  W
Sbjct: 86  LRSDDTAVYYCARSRPIIMGR---GVLPPGHWFDLW 118


>BC117303-1|AAI17304.1| 1021|Homo sapiens dynein heavy chain domain
           1 protein.
          Length = 1021

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 204 PERSVSPRTVVPKMARRHQPGEKHSSVISKG 296
           P  ++ P TV+ K+A ++Q G+K   VI+ G
Sbjct: 366 PSATLHPLTVIQKLAAKYQQGQKQLQVIALG 396


>BC117301-1|AAI17302.1| 1021|Homo sapiens dynein heavy chain domain
           1 protein.
          Length = 1021

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 204 PERSVSPRTVVPKMARRHQPGEKHSSVISKG 296
           P  ++ P TV+ K+A ++Q G+K   VI+ G
Sbjct: 366 PSATLHPLTVIQKLAAKYQQGQKQLQVIALG 396


>AY271826-1|AAQ01753.1|  417|Homo sapiens ZYG-11A early
           embryogenesis protein protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 260 TRRKAQQCYFKGETHRLFPPVLXGEISLPRLLSLV 364
           +R + + C+ K   HRLF      E+++P +L LV
Sbjct: 9   SRYRNRSCFVKEALHRLFTETFSMEVTMPAILKLV 43


>AK057314-1|BAB71423.1| 1021|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32752 fis, clone TESTI2001661, weakly similar to
           DYNEIN BETA CHAIN, FLAGELLAR OUTER ARM. ).
          Length = 1021

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 204 PERSVSPRTVVPKMARRHQPGEKHSSVISKG 296
           P  ++ P TV+ K+A ++Q G+K   VI+ G
Sbjct: 366 PSATLHPLTVIQKLAAKYQQGQKQLQVIALG 396


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,506,641
Number of Sequences: 237096
Number of extensions: 2811648
Number of successful extensions: 14457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14457
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)