Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C08
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    49   4e-06
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.003
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    33   0.19 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    31   1.4  
U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 2/192 (1%)
 Frame = +1

Query: 10  RVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNYIPRSPPTQLAL--FADDTTVYYSSRNK 183
           R+  T SS +  T GVPQG            N I    P ++A   FADDT +Y +S  K
Sbjct: 62  RIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLY-ASTPK 120

Query: 184 SLIASKLQSAALALGQWFRKWRVDINPAKSTAVLFQRGNSPLISSRIXRRNITPPITLFS 363
           +   + LQSA  A+  W +  ++ +N +K+  V             + +R I     L  
Sbjct: 121 TESENNLQSALDAVVDWTKGSKLTLNQSKTVHV------------TVGKRRIDFKYHLDG 168

Query: 364 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILSRLYPMICKRSKMSLRNKVTLYK 543
             I      + LG  +   + F  H +   + A F L+ ++    K S  + +  + LYK
Sbjct: 169 YPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---KYSTSNKKLMILLYK 225

Query: 544 TCIRXVMTYASV 579
           T IR  + Y +V
Sbjct: 226 TFIRPRLEYGTV 237


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
 Frame = +1

Query: 43  LTAGVPQGXXXXXXXXXXXXNYIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALA 222
           L  GVPQG              +P    T L  +ADD ++    +     A K+Q     
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDE 588

Query: 223 LGQWFRKWRVDINPAKSTAVLFQRGNSPLISSRIXRRNITPPITLFSQSIPWARKVKYLG 402
           + ++ ++  + I+  KST  +F        S         P I      IP     K LG
Sbjct: 589 IAKYLKERGMSISAEKSTVTVF--------SCDPKEHKTKPDIYWMDDPIPVINAPKLLG 640

Query: 403 VTLDASMTFRPH----IKSVRDRAAFILS 477
           +TL+     + H    IKS++++   I S
Sbjct: 641 ITLNTMTGTKDHVGNAIKSMQNKTRVIKS 669


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 104 LTNKLNRRGERTEPCGTPAVSGRGEER 24
           LTN     GERT+PCGTP  +  G E+
Sbjct: 52  LTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 397 LGVTLDASMTFRPHIKSVRDRAAFILSRLYPMICKRSKMSLRNKVTLYKTCIRXVMTYAS 576
           LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT I  ++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254


>U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical
           protein C09B9.8 protein.
          Length = 206

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 711 SITEIXEGQRPNXTSIRVCLMNNPLIVGRPLTT 809
           ++T++  G RP  +SI VC    PL  G  + T
Sbjct: 150 NLTQLVSGGRPEESSINVCSCRGPLCNGSTINT 182


>Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical
           protein W04A4.6 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 17  RGPAPPRDHSRLECRKAPFSHPSYLAYSLTIFLGRRR 127
           R P PP  ++  E    P++H  Y  +  TI L +RR
Sbjct: 16  RAPLPPVRNTDTEVDCTPYAHVQYRPFCQTIRLEKRR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,519
Number of Sequences: 27780
Number of extensions: 387980
Number of successful extensions: 893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)