Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C08
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.2  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 424 TFRPHIKSVRDRAAFILSRL 483
           T + H+K VR++ A ILSR+
Sbjct: 43  TLQTHMKKVREQMAGILSRI 62


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 302 EFPL*NNTAVLFAGLMSTRHFRNHCPRANAALWSLL 195
           E P    TAV     +    +  H PR   ALWSL+
Sbjct: 69  ELPARGLTAVFLGLNLGFLAWAKHNPRGKDALWSLV 104


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 532 TLYKTCIRXVMTYASVGVRSRGPHTHRHPPI 624
           T     +  ++T   +    RGP THR P +
Sbjct: 303 TFIMNTVSILVTVIIINWNFRGPRTHRMPQL 333


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 436 HIKSVRDRAAFILSRL 483
           H+K VR++ A ILSR+
Sbjct: 95  HMKKVREQMAGILSRI 110


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 436 HIKSVRDRAAFILSRL 483
           H+K VR++ A ILSR+
Sbjct: 95  HMKKVREQMAGILSRI 110


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 436 HIKSVRDRAAFILSRL 483
           H+K VR++ A ILSR+
Sbjct: 95  HMKKVREQMAGILSRI 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 294  GKLTAYFLPYXEEKYHSPDYSL*SIHTLGQEGQVPGRYPG 413
            G +  + + Y E    +P Y+  S+   G+EG    R  G
Sbjct: 1037 GDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTG 1076


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 294  GKLTAYFLPYXEEKYHSPDYSL*SIHTLGQEGQVPGRYPG 413
            G +  + + Y E    +P Y+  S+   G+EG    R  G
Sbjct: 1033 GDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTG 1072


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 532 TLYKTCIRXVMTYASVGVRSRGPHTHR 612
           T+    +  V+T A + V  R P THR
Sbjct: 306 TMVLVTLSVVVTIAVLNVNFRSPVTHR 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,350
Number of Sequences: 438
Number of extensions: 4978
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)