Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C07
(950 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 2e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 3e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 7e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 7e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 36 7e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 28 0.14
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.19
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 24 1.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 4.1
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 9.4
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 9.4
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 9.4
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 9.4
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 CGRMRKRNITVPHDRLAPRQRTIGSLPPHSKIVXNLTLHLRHANIRESESTVRILADLQM 249
CGR KR + +R + + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 250 NWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
W+D L WN E+ G ++ +LW+PD+++
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 CGRMRKRNITVPHDRLAPRQRTIGSLPPHSKIVXNLTLHLRHANIRESESTVRILADLQM 249
CGR KR + +R + + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 250 NWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
W+D L WN E+ G ++ +LW+PD+++
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 37.5 bits (83), Expect = 2e-04
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LQMNWIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
++ +W D +L W+ E+G L V S+ +WRPD+VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LQMNWIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
++ +W D +L W E+G L V S+ +WRPD+VL
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LQMNWIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
++ +W D +L W E+G L V S+ +WRPD+VL
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 36.7 bits (81), Expect = 3e-04
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 130 RTIGSLPPHSKIVXNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAXEWG-CST 303
R +G+ + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 304 WLVSSERLWRPDVVL 348
V SE +W PD+VL
Sbjct: 95 LHVPSEHIWLPDIVL 109
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 36.7 bits (81), Expect = 3e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LQMNWIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
++ W D +L WN E+G L V SE +W PD+VL
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.5 bits (78), Expect = 7e-04
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 181 LHLRHANIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
L ++H N+ E TV L++ W L W + E+ ++ V S +W PD+V+
Sbjct: 66 LSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.5 bits (78), Expect = 7e-04
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 163 IVXNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPD 339
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 340 VVL 348
+L
Sbjct: 92 TIL 94
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 35.5 bits (78), Expect = 7e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LQMNWIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
L+ W D + W+ E+G T L V SE +W PD+VL
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVL 109
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.5 bits (73), Expect = 0.003
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 73 GRMRKRNITVPHDRLAPRQRTIGSLPPHSKIVXNLTLHLRHANIRESESTVRILADLQMN 252
G KR + D +R +G+ + LTL ++ ++ E + L++
Sbjct: 21 GSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLE 79
Query: 253 WIDKRLXWNAXEWGCSTWL-VSSERLWRPDVVL 348
W D + WN ++G L + RLW+PDV++
Sbjct: 80 WNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLM 112
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.1 bits (72), Expect = 0.004
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 NIRESESTVRILADLQMNWIDKRLXWNAXEW-GCSTWLVSSERLWRPDVVL 348
N+ E ++ L+ W D +L W+ ++ G + +++W+PD+VL
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVL 115
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 27.9 bits (59), Expect = 0.14
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = +1
Query: 202 IRESESTVRILADLQMNWIDKRLXWNAXEWGCSTWLVSSERLWRPDVVLLTRGCNHRRGL 381
I E + T + + +W+D+RL + + + + R+W+PD ++ +
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 382 RSP 390
SP
Sbjct: 104 TSP 106
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.5 bits (58), Expect = 0.19
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 88 RNITVPHDRLAPRQRTIGSLPPHSK----IVXNLTLHLRHANIRESESTVRILADLQMNW 255
RNIT+ + L LP H K +V L + E + + + +W
Sbjct: 35 RNITMVLENLLMNYEN-NQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSW 93
Query: 256 IDKRLXWNAXEWGCSTWLVSSERLWRPD 339
D RL + S + ER+WRPD
Sbjct: 94 RDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 24.2 bits (50), Expect = 1.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 295 CSTWLVSSERLWRPDVVLLTRGCNHRRGLRSPXPVYLXXAPVS 423
C ++ S+ W + TR NH+ G P Y A VS
Sbjct: 520 CDEFVEDSDDYWNCVIQYNTRAENHQTGTAKMGPSYDPMAVVS 562
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 130 VGEERVDHEGQ*CCVFAFCRTSYSIK*GETVTRII 26
VG+ + G+ CC F T Y I+ + VT+ I
Sbjct: 593 VGQAKKYVAGEQCCWHCFNCTQYQIRDHKDVTQCI 627
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,119
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 46
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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