Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C06
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.5  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   6.1  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.1  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 371 PPPGTTLSAPVYLITAPSPG*SAWTLXLQFLCS*TIGPTTCRLARSSSVLG 523
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 402 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSXSVVCRSNS 253
           T + S    GGCS    +   PP AFRG+  +   P       V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 400 GRGERSPRRWLQPRLAVPRQASTSVPRTP 314
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,071,338
Number of Sequences: 37544
Number of extensions: 460014
Number of successful extensions: 1276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)