Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C05
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 198 8e-52
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 192 7e-50
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 33 0.069
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 32 0.12
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.21
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.6
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 198 bits (483), Expect = 8e-52
Identities = 99/177 (55%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Frame = +1
Query: 133 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVXARRSSW 312
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+ ARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 313 RVISSIEQKTE--GSXRKXQMAKEYXVKVXKXLREICYDVLGLLDKHLIPKASNPXSKVF 486
R++SSIEQK E G+ + ++ KEY K+ + L IC D+L +L+KHLIP A++ SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 487 YLKMKGDYYRYLAXVATGETRHSVVXDSQKAYQDAFEISKAKMQPTHPIXLGLALKF 657
Y KMKGDYYRYLA A GE R S + Y+ A EI+ A++ PTHPI LGLAL F
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179
Score = 87.4 bits (207), Expect = 2e-18
Identities = 44/69 (63%), Positives = 53/69 (76%)
Frame = +3
Query: 609 ENAAHTPHXAGSGVKISQLFXYEILNSPDKACQLAKQAFDDAIAELDTLNQDSYKDSTLI 788
E A P G + S +F YEILNSPD+AC LAKQAFD+AI+ELD+L+++SYKDSTLI
Sbjct: 164 ELAPTHPIRLGLALNFS-VFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLI 222
Query: 789 MHXLRDNLT 815
M LRDNLT
Sbjct: 223 MQLLRDNLT 231
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 192 bits (467), Expect = 7e-50
Identities = 98/178 (55%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 130 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVXARRSS 309
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++ ARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 310 WRVISSIEQKTE--GSXRKXQMAKEYXVKVXKXLREICYDVLGLLDKHLIPKASNPXSKV 483
WR+ISSIEQK E G+ R+ + KEY K+ L +IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 484 FYLKMKGDYYRYLAXVATGETRHSVVXDSQKAYQDAFEISKAKMQPTHPIXLGLALKF 657
FY KMKGDYYRYLA GE S +AY+ A +I+ A++ PT P+ LGLAL F
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = +3
Query: 627 PHXAGSGVKISQLFXYEILNSPDKACQLAKQAFDDAIAELDTLNQDSYKDSTLIMHXLRD 806
P G + S +F YEIL+SP+ AC LAKQ FD+AI+ELD+L+++SYKDSTLIM LRD
Sbjct: 169 PMRLGLALNFS-VFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRD 227
Query: 807 NLT 815
NLT
Sbjct: 228 NLT 230
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 32.7 bits (71), Expect = 0.069
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 747 DTLNQDSYKDSTLIMHXLRDNLTPLDVRHSRRWR 848
DT N+D YKDST H + +TPL+ R W+
Sbjct: 35 DTGNKDYYKDSTGAYHFDKLIVTPLEYRDGESWK 68
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 133 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVXARR 303
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 304 SSWRVIS 324
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +1
Query: 112 PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 285
P+ S TMS E + R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 286 VVXARRSSWRVISSIEQKTEGSXRKXQMAKEYXVKVXKXLREIC 417
+R+ + +E+ + EY + + L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 92 KGISELVLSHRPRCPSTRKNWCNVPNW 172
+G+ + LS RC +T CNVP W
Sbjct: 694 EGVRKSALSSLWRCATTYYKVCNVPQW 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,406
Number of Sequences: 5004
Number of extensions: 60661
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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