Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C03
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 254 8e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 250 8e-67
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 31 1.1
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 31 1.5
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 1.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.1
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.1
08_02_0610 + 19307537-19308011,19308187-19310846 29 6.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 29 6.1
05_06_0034 + 25082875-25084113 29 6.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 254 bits (621), Expect = 8e-68
Identities = 119/195 (61%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
Frame = +1
Query: 52 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 231
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 232 KLVLAARAVVGIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 591
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 592 LLAREVLRLRG-VLP 633
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 644 RWDVVVDLFFYRXPEXSEKDEXQAKEXXXXXXXXXXXXXXHEDWNETLXQWLHWAEXTAP 823
+WDV+VDLFFYR PE +++ E +A E W + QW ++ AP
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITDYTAP---EQW--SADQWT--SDVAAP 250
Query: 824 PAA 832
PAA
Sbjct: 251 PAA 253
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 250 bits (613), Expect = 8e-67
Identities = 116/184 (63%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVG 264
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +V
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 625 -VLP 633
+LP
Sbjct: 192 TILP 195
Score = 36.7 bits (81), Expect = 0.023
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 644 RWDVVVDLFFYRXPEXSEKDEXQ 712
+WDV+VDLFFYR PE +++ E +
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEE 220
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 669 NKSTTTSQRWSAGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 547
N S+T+S WS K T KP FT P + + + AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 159 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRRH 266
P +C+ T C C K CS CSC +RH
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/78 (29%), Positives = 28/78 (35%)
Frame = +3
Query: 105 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRRHREPR*C 284
CH C P GR+ P G + CD A+ G TC C RH+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 285 VRHLITAIRSACCTEVCR 338
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 152 TFSAPRWVVAASILVTSSSLRASTSNP 72
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 380 PGVKRP-AIGVAPVCAANFSTAR*PNGRDEMTNTSAGFSMPTTARAART 237
P ++ P A AP CAA + A +GR T T+A T+RA+RT
Sbjct: 918 PPLRAPQARAAAPACAARGAAAAATSGRTGPTTTTAN-PCTCTSRASRT 965
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 334 QTSVQHADRMAVMR*RTHQRGSRCLRQHEQPEQVFPRYDAS*SHGYHQHVVC 179
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>05_06_0034 + 25082875-25084113
Length = 412
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -2
Query: 290 TNTSAGFSMPTTARAARTSFSQVRRKLITWVPSARRL*T*VSIWKLTFSAPRWVVAASIL 111
++ SA S PT + ART FSQ+ R ++ + + + I SA V+AAS+
Sbjct: 96 SSPSAAPSSPTASARARTVFSQIARIVLGGI--VKPIQALGQILSPANSAS--VLAASVT 151
Query: 110 VT-SSSLRASTSNPP 69
+ SSS +S+S+PP
Sbjct: 152 SSPSSSSSSSSSSPP 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,329,471
Number of Sequences: 37544
Number of extensions: 557112
Number of successful extensions: 1483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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