Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C02
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.62
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 3.3
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 27 4.4
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 5.8
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.8
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 5.8
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 7.7
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 7.7
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 7.7
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.62
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = -1
Query: 461 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 282
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 281 TMKIHGP-TARWVFSKS--LTMVQFIRNXTPIPTSSRPRSAT 165
+ P T+ V + S +T + TPI +SS S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.3
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -1
Query: 407 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 237
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 236 SLTMVQFIRNXTP---IPTSSRPR-SATTRLKKNSTY 138
M ++ R+ IP S R S T R +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 589 LPESCCVKXSILSTFAGNNCTVDAANPGCGPKIGELYHKWNXPIPGVALGV--ACV 750
L +C S L FAG+ A PKI + ++W P+ VA+ V AC+
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACL 395
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 423 GEEEDADHHLHNDDHQQEDCVRDDH 349
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 273 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 389
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 236 SLTMVQFIRNXTPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 108
SL + +F + T + +P S T + NS+ FTK P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 335 RIAPQHPKNAITNITAPTTMKIHG 264
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 544 ECCGNTGAINYDQFTLPESCCVKXSILSTFAGNNCTVDAANPGC 675
+C G+ Y Q C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 420 EEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDSK 253
+E++ + L DD + +ED + D+ + + +E + E +P+ + +S+
Sbjct: 49 DEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKKNSR 105
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 414 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 277
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,132
Number of Sequences: 5004
Number of extensions: 49321
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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