Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C02
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     33   0.38 
02_02_0310 - 8842286-8843314                                           32   0.66 
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   3.5  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    29   6.1  
11_02_0104 + 8329231-8329902                                           29   6.1  
11_02_0093 - 8238947-8239615                                           29   6.1  
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020...    29   6.1  
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    28   8.1  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 571 NYDQFTLPESCCVKXSILSTFAGNNCTVDAA 663
           N D    P SCCV+  I+S F   NCT D A
Sbjct: 46  NADDSVGPASCCVRKIIVSNFLPLNCTKDEA 76


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 402 HHLHNDDHQQEDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 250
           HH H+D++++++  + D A     R  +  + R H H+  DD+E     + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -3

Query: 417  EEDADHHLH--NDDHQQEDC 364
            EE +DHH H  N++H+ EDC
Sbjct: 973  EESSDHHEHHHNEEHKAEDC 992


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 330 DTRESLHGRHVRNLLAGDHHCASGDQRPPLHLRREHQ 440
           ++ + L G  V N+L GDH  A  +QR     +R+ Q
Sbjct: 763 NSTDDLSGPDVSNVLVGDHQPADAEQRAQKREQRQKQ 799


>11_02_0104 + 8329231-8329902
          Length = 223

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 759 YHLNTSNTESNAGYRXVPFVVELADLGTAAGIRGV 655
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96


>11_02_0093 - 8238947-8239615
          Length = 222

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 759 YHLNTSNTESNAGYRXVPFVVELADLGTAAGIRGV 655
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96


>09_04_0619 -
           19001350-19001359,19001737-19001800,19001955-19002099,
           19002434-19002917,19003175-19003260,19003417-19003484,
           19003565-19003709,19004561-19004677
          Length = 372

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 654 DRAVVAGEGREDAXLDATGLGQRELVVVDSASVT 553
           D     G G+E+  L+ATG+   E+ + D+  +T
Sbjct: 28  DHFTPVGAGQEELGLEATGIESNEIKIADTTEMT 61


>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 426 VGEEEDADHHLHNDDHQQEDCVRDDHAV 343
           + EE+D DHH H+  H   D    +HA+
Sbjct: 324 IAEEDDDDHHHHHHYHGDADDDDGEHAM 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,394
Number of Sequences: 37544
Number of extensions: 370982
Number of successful extensions: 1261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)