Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C01
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.40 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.9  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   4.9  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   8.5  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 244 VRVHRADTGRSSNELDRQTTELERRGMGL 330
           +R H+   GR+  ELDR+ T+L++R   L
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL 46


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 167 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 69
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 322 FPCVPTQSFVDPIHLKICQYPHGGL 248
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 149 TRSSQRTIGSLPPHSKIVVNLTLHLRHANI 238
           T S+Q  + S+  H+K+ +NLTL+L  +++
Sbjct: 463 TLSAQIAVQSVSSHAKLGMNLTLYLTFSSV 492


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 434 YTGRGERSPRRWLQPRLAVPRQASTSVPR 348
           Y+GR  R  R   +PR++ P  +ST VP+
Sbjct: 44  YSGRTRRRNRN-TRPRVSAPSSSSTVVPK 71


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 49   MSTTYIILLPFLLTCAIASAAECENATSLS 138
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,877
Number of Sequences: 5004
Number of extensions: 44762
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)