Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C01
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715           30   2.9  
06_03_0002 - 15280292-15281550,15282714-15282840                       30   2.9  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   3.9  
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262...    29   6.8  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   6.8  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   9.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.0  

>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
          Length = 462

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +1

Query: 223 ETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLXHLAGVLGTLVEA*RGTAKRGCNH 402
           E C +  V V + D  RS   L   T++ ++ G    H A  L T +E   G   R C H
Sbjct: 57  EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113

Query: 403 RRGLRSPRPVYL 438
            R  +SP  + L
Sbjct: 114 FRPKQSPTTLLL 125


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 379 TAKRGCNHRRGLRSPRPVYLITAPPPXIKRXDXSTP 486
           T  RG N  R LRSP P  L+    P I   D   P
Sbjct: 59  TVSRGRNPHRSLRSPNPRLLMVQEEPNITTPDAGHP 94


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 244 VRVHRADTGRSSNELDRQTTELERRGMGLXHLAGVLGTL 360
           V+ H  +  R S EL+RQ  ELER+G  L    G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>01_05_0705 + 24424457-24424948,24425520-24425624,24426097-24426207,
            24426675-24426857,24427066-24427192,24427336-24427397,
            24427638-24427724,24428703-24428789,24429210-24429323,
            24429507-24429635,24429834-24429896,24430333-24430494,
            24430611-24430729,24430786-24431794
          Length = 949

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 390  RLQPPPGTTLSAXRVSNNGSASXHKAXGXXHSN 488
            RL PPP  ++   R  N G ++  +A    HSN
Sbjct: 905  RLAPPPSASVGRGRGRNQGQSALSRASRTPHSN 937


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 437 RYTGRGERSPRRWLQPRLAVPRQASTSVPRTPAKXCSPIPLRSNSVVCRSNSFEDLPVSA 258
           R + R  RSPRR   P     R  + +  R+PA   S  P+R++S     +   D+  +A
Sbjct: 220 RGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -1

Query: 494 IEIGVLXSXRFMXGGGA-VIRYTGRGERSPRRWLQPRLAVPRQASTSVPRTP-AKXCSPI 321
           I+ GV     F     A V+R+  R  R  RRWL      PR  ST   R    + C+  
Sbjct: 257 IDFGVPFPSHFHPTSDADVLRWQDRMRRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTAS 316

Query: 320 P 318
           P
Sbjct: 317 P 317


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTP 342
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,483
Number of Sequences: 37544
Number of extensions: 396602
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)