Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B24
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    31   1.6  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   3.7  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    29   4.9  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.6  

>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/85 (28%), Positives = 31/85 (36%)
 Frame = +1

Query: 88  CCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTG 267
           C    CG        V H  L    V   LP R     +   A   C  + +R HR ++ 
Sbjct: 15  CFEEACGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSR 74

Query: 268 RSSNELDRQTTXLERRGSGAAXLGW 342
           RS     R++  L RR      LGW
Sbjct: 75  RSHRRCRRRSPRLWRRSGSGFLLGW 99


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 428 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSXAAPLPLRSXSVVCRSNS 279
           T + S    GGCS    +   PP AFRG+  +   P+      V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 819 PAXKXXPXXPGLXXHRGNPXSAPPXXXXPXAPLPEKHXG 703
           PA       PG     GN  + PP    P  P P +H G
Sbjct: 93  PAFGGVAMTPGRIWADGNAVAGPPAPTPPWTPRPRRHGG 131


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,708
Number of Sequences: 37544
Number of extensions: 383998
Number of successful extensions: 1138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)