Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B23
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.0  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   4.0  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   4.0  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 5   DDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 148
           +D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 199 NDPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 163 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 294
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 163 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 294
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 745 YRPSQTP-PXGSVLEPGSRGSFKRXRAFPPXHHXARLERNTVRPPIL 608
           YRPS+ P P  S  EPG   SF   + FP     +R ++  V PPI+
Sbjct: 85  YRPSENPGPSSSSYEPG-HYSFNEYQQFP-----SRPQKRLVDPPIV 125


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 745 YRPSQTP-PXGSVLEPGSRGSFKRXRAFPPXHHXARLERNTVRPPIL 608
           YRPS+ P P  S  EPG   SF   + FP     +R ++  V PPI+
Sbjct: 85  YRPSENPGPSSSSYEPG-HYSFNEYQQFP-----SRPQKRLVDPPIV 125


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 641 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLXY 507
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,360
Number of Sequences: 27780
Number of extensions: 365038
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)