Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B22
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    26   5.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   7.6  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   7.6  

>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 617 VALCRRLGSDPVQELTEATMPSEHLREPESEA 522
           V L R++G +  Q++ E T    H   PESEA
Sbjct: 227 VNLIRKMGHEAKQQVNEYTAIPLHEMNPESEA 258


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 631 DLDTAEHTLVTCPAWEG 681
           DL      L+TCP+W+G
Sbjct: 122 DLSVENKVLLTCPSWDG 138


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 350 TKVSPSLIVSSESLRLQDPRRRPSQYTRRLERDGAITTDDPDRD 219
           +KVSP+ I SS    L+    +   +T  +E    +   DP RD
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRD 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,419
Number of Sequences: 5004
Number of extensions: 78261
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)