Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_B22
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0128 - 10437407-10438049,10438097-10438272 33 0.37
01_06_0406 + 29113033-29113119,29113250-29113309,29114104-291141... 31 1.1
08_02_1376 - 26528208-26528279,26529690-26529986 31 1.5
11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478 30 2.0
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 30 2.0
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 30 2.0
01_01_0106 + 788967-789555,790139-790162,790339-791411 30 2.0
10_08_0557 + 18745687-18745767,18746496-18746596,18747187-18747277 30 2.6
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.6
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 29 4.6
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 29 6.1
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 28 8.1
09_02_0028 + 3109502-3110232,3110274-3110727 28 8.1
04_04_1419 - 33433463-33436009 28 8.1
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 32.7 bits (71), Expect = 0.37
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +3
Query: 636 GHGRAYARHLPRMGRGGAVSSSQK*EATCR--CRVLWHXCSATTXXGRRCSTSASA---- 797
GH RA RHLPR R A +SS TCR CR + S G RCS+S +A
Sbjct: 120 GH-RARQRHLPRRSRSTASTSS----TTCRTCCRATPNSTS-PCKTGSRCSSSTTARRIS 173
Query: 798 -PSPKRRLXG 824
SP++R G
Sbjct: 174 ITSPRKRGRG 183
>01_06_0406 +
29113033-29113119,29113250-29113309,29114104-29114186,
29114394-29114556,29114695-29114824,29115016-29115174,
29115295-29115464,29115590-29115670,29116492-29116536,
29116597-29117346,29117424-29117654
Length = 652
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = -1
Query: 587 PVQELTEATMPSEHLREPESEASSVTIHPIHKNRANRLDGPTTSR--RIGQPSGP*LQHG 414
P+ + T S+ + E E+E + H A + G R + G P P Q+G
Sbjct: 395 PISSIARITHGSKRVTELETEEEATRRHQPMAEHATGVYGHPYPRVDQYGNPVPPVDQYG 454
Query: 413 PPRSGPPRSDYTGAGTCHAPDTKVS 339
P P T AG PD VS
Sbjct: 455 NPVPDEPAPRDTAAGYVAPPDPAVS 479
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 465 RTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAKPTAECHH 620
RT + RP LV+ + +D LTF Q L G ++G+ P A+CHH
Sbjct: 16 RTFDTNRPALVS-LYQDGSMLTFEGQQFLGAAAIAG----KLGSLPFAQCHH 62
>11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 375 GWDVPRPGHEGQPVSDSQQREXXXXXPKAASQPVHTPPRKRWCDNHG*P*PRW 217
GW+ PRP ++G+ +++ K QP T P++ +CD P P+W
Sbjct: 249 GWNQPRPYYQGEANGIAKEALSNDSADKEV-QPEKTVPQE-YCDTRLLPFPQW 299
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 EDASLSGSRRCSLGMVASVSSCTGSEPSRRQSATIVGCDLDTA 645
+ ++ S++C V SV + S P R+ I+GC L A
Sbjct: 253 QSSNPKSSKKCDQTAVKSVKAAQNSRPDERKKKKILGCSLQHA 295
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 470 GPTTSRRIGQPSGP*LQHGPPRSGPPR 390
GP T +GQ G +HGPP GP +
Sbjct: 422 GPVTDHGLGQVDGVEARHGPPLIGPAK 448
>01_01_0106 + 788967-789555,790139-790162,790339-791411
Length = 561
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 529 LSGSRRCSLGMVASVSSCTGS-EPSRRQSATIVGCDLDT 642
+ S C L +AS + T EP ++ ATIVGC D+
Sbjct: 38 VESSSNCPLQKLASTNVSTAVYEPQKKDGATIVGCSKDS 76
>10_08_0557 + 18745687-18745767,18746496-18746596,18747187-18747277
Length = 90
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 578 PAPDRSQADGRVPPLLVATWTRQSIR-SSPAPHGKGWR 688
P PDR+ + P V T + +R +S APHG+ WR
Sbjct: 39 PDPDRTAGTVSLHPTPVLLQTPERLRIASIAPHGEAWR 76
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 467 PTTSRRIGQPSGP*LQHGPP--RSGPPRSDYTGAGTCHAPDTKVSPSLIVSSESLRLQDP 294
PTTS +P P L+ PP R GPP ++ + P T + SS SL P
Sbjct: 295 PTTSHL--RPGSPELRPLPPLPRVGPPSGEFASRSSASDPSTAPPAAAEASSSSLSPSSP 352
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 593 SDPVQELTEATMPSEHLREPESEASSVTIHPIHKNRANRLDGPTTSRRIGQPS 435
SD + + E PSE L E+E P+H++ N+ D P T + P+
Sbjct: 430 SDDILAIIEELRPSEELETRETEPCHKHNSPVHESE-NQQDSPMTDIFLENPT 481
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 397 GPDLGGPCWSHGPDGWPILRLVVGPSRR 480
G GG H P P+LR VVGP+RR
Sbjct: 15 GAGAGGYKRGHPPPPSPLLRSVVGPTRR 42
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 511 VTEDASLSGSRRCSLGMVASVSSCTGSEPSRRQSATIVGCDLDT 642
VTE SL GS SL + + S C+G + + S++ + C+++T
Sbjct: 194 VTESRSLIGS---SLARIQAESFCSGRNRNGKGSSSSIKCNIET 234
>09_02_0028 + 3109502-3110232,3110274-3110727
Length = 394
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 429 WSRRLADPSAGRRTVEAIRPVLVNWVNRDRG 521
W R +DP+ RR RP L+ ++ DRG
Sbjct: 47 WRRAASDPAIFRRFFPLRRPPLIGFILTDRG 77
>04_04_1419 - 33433463-33436009
Length = 848
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 556 GMVASVSSCTGSEPSRRQS-ATIVG--CDLDTAEHTL 657
G++ SC EPSRR S +T+V LDT EH L
Sbjct: 776 GLLELAVSCVDGEPSRRPSMSTVVHKLISLDTIEHHL 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,291,514
Number of Sequences: 37544
Number of extensions: 705414
Number of successful extensions: 2440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -