Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_B22
(839 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 56 5e-08
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 42 8e-04
AY119070-1|AAM50930.1| 157|Drosophila melanogaster LP08443p pro... 32 1.1
AE013599-3681|AAF47057.1| 157|Drosophila melanogaster CG11300-P... 32 1.1
M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein... 30 3.4
BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p pro... 30 3.4
AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p pro... 30 3.4
AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA... 30 3.4
AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB... 30 3.4
AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA... 30 3.4
AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD... 30 3.4
AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC... 30 3.4
BT016135-1|AAV37020.1| 1218|Drosophila melanogaster GH06496p pro... 29 7.9
AY051667-1|AAK93091.1| 400|Drosophila melanogaster LD21709p pro... 29 7.9
AE014134-3575|AAN11147.1| 400|Drosophila melanogaster CG15218-P... 29 7.9
AE014134-3574|AAN11146.1| 400|Drosophila melanogaster CG15218-P... 29 7.9
AE013599-3326|AAG22194.1| 1218|Drosophila melanogaster CG6562-PB... 29 7.9
AE013599-3325|AAF46796.1| 1218|Drosophila melanogaster CG6562-PA... 29 7.9
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 56.4 bits (130), Expect = 5e-08
Identities = 40/136 (29%), Positives = 61/136 (44%)
Frame = +3
Query: 216 TIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQRRADLRVRGXXXXXXXXXXXX 395
T+A+R+IRG+RTIS +AA L+G P L+ + + L ++
Sbjct: 800 TMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYTQLEIKEWIRGV------- 852
Query: 396 XXXXXXXXLESWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGE 575
W R + GR T + I P L W + + + + +TQ LT HGCF
Sbjct: 853 -----------WQTRWQESQRGRWTYKLI-PQLTEWADCEHKTVDYHMTQFLTDHGCFRG 900
Query: 576 FLHRIGAKPTAECHHC 623
+L R TA+C +C
Sbjct: 901 YLCRFRHVDTAQCLYC 916
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 42.3 bits (95), Expect = 8e-04
Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 5/128 (3%)
Frame = +3
Query: 246 RTISFEAACVLAGTPPWVLEAEALAADYQRRADLRVRGXXXXXXXXXXXXXXXXXXXXLE 425
RT+S A VL G PP L A+ LA Y+ + + LE
Sbjct: 828 RTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRGFPLEENDWLYGEDIACLSWEQRKTRLE 887
Query: 426 -----SWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGEFLHRI 590
SW R D S R P + + R + +LTGHG F FLH
Sbjct: 888 ECLIQSWQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLHGR 947
Query: 591 GAKPTAEC 614
T C
Sbjct: 948 ALSDTTAC 955
>AY119070-1|AAM50930.1| 157|Drosophila melanogaster LP08443p
protein.
Length = 157
Score = 31.9 bits (69), Expect = 1.1
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = -1
Query: 467 PTTSRRIGQPSGP*LQHGPPRSGPPRSDYTGAGTCHAPDTKVSPSLIVSSESLRLQDPRR 288
P+ S G P+ P G P S P D + T +P T SPS SS S + RR
Sbjct: 60 PSASPAAGTPTSPTPATGTP-SSPATPDAPASST--SPATPTSPSDSGSSSSQEVIRLRR 116
Query: 287 RPSQYTRRLERD 252
R + R+L R+
Sbjct: 117 RLRRLRRQLRRE 128
>AE013599-3681|AAF47057.1| 157|Drosophila melanogaster CG11300-PA
protein.
Length = 157
Score = 31.9 bits (69), Expect = 1.1
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = -1
Query: 467 PTTSRRIGQPSGP*LQHGPPRSGPPRSDYTGAGTCHAPDTKVSPSLIVSSESLRLQDPRR 288
P+ S G P+ P G P S P D + T +P T SPS SS S + RR
Sbjct: 60 PSASPAAGTPTSPTPATGTP-SSPATPDAPASST--SPATPTSPSDSGSSSSQEVIRLRR 116
Query: 287 RPSQYTRRLERD 252
R + R+L R+
Sbjct: 117 RLRRLRRQLRRE 128
>M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein
protein.
Length = 1638
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p
protein.
Length = 1634
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p
protein.
Length = 1638
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA
protein.
Length = 950
Score = 30.3 bits (65), Expect = 3.4
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Frame = -1
Query: 503 PIHKNRANRLDGPTT---SRRIGQPSGP*LQHGPPRSGPPRSDYTGAGTCHAPDTKVSPS 333
P H+ ++ P S+ G P P +GPP+S PP Y G P +K P
Sbjct: 219 PHHRRPSSSYGAPRPAPPSQSYGAP--PSASYGPPKSAPPSQSY---GAPAPPSSKYGPP 273
Query: 332 LIVSSESLRLQDPRRRPSQY 273
S S P S Y
Sbjct: 274 KSAPSSSYGAPRPAAPSSSY 293
>AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB,
isoform B protein.
Length = 1638
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA,
isoform A protein.
Length = 1638
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD,
isoform D protein.
Length = 1634
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC,
isoform C protein.
Length = 1634
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 PESEASSVTIH-PIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
P S++ + + H P + L GP G P +QHGPP GPP
Sbjct: 22 PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHP-MQHGPPGQGPP 69
>BT016135-1|AAV37020.1| 1218|Drosophila melanogaster GH06496p protein.
Length = 1218
Score = 29.1 bits (62), Expect = 7.9
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Frame = -1
Query: 683 TPSHAGQVTSVCSAVSKSQPTMVALCRRLGSDPVQ----ELTEATMPSEHLREPESEASS 516
+P+ +S S+ K+ PT A+ + P Q + T + P+ + P+ S
Sbjct: 1090 SPTELVSASSSTSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPS 1149
Query: 515 VTIHPIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
T + N + + R P+GP G P PP
Sbjct: 1150 DTAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPP 1190
>AY051667-1|AAK93091.1| 400|Drosophila melanogaster LD21709p
protein.
Length = 400
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 482 NRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
N L GPT GQPSG + H PP PP
Sbjct: 319 NLLQGPTPP---GQPSGYHIYHAPPPPPPP 345
>AE014134-3575|AAN11147.1| 400|Drosophila melanogaster CG15218-PB,
isoform B protein.
Length = 400
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 482 NRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
N L GPT GQPSG + H PP PP
Sbjct: 319 NLLQGPTPP---GQPSGYHIYHAPPPPPPP 345
>AE014134-3574|AAN11146.1| 400|Drosophila melanogaster CG15218-PA,
isoform A protein.
Length = 400
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 482 NRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
N L GPT GQPSG + H PP PP
Sbjct: 319 NLLQGPTPP---GQPSGYHIYHAPPPPPPP 345
>AE013599-3326|AAG22194.1| 1218|Drosophila melanogaster CG6562-PB,
isoform B protein.
Length = 1218
Score = 29.1 bits (62), Expect = 7.9
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Frame = -1
Query: 683 TPSHAGQVTSVCSAVSKSQPTMVALCRRLGSDPVQ----ELTEATMPSEHLREPESEASS 516
+P+ +S S+ K+ PT A+ + P Q + T + P+ + P+ S
Sbjct: 1090 SPTELVSASSSTSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPS 1149
Query: 515 VTIHPIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
T + N + + R P+GP G P PP
Sbjct: 1150 DTAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPP 1190
>AE013599-3325|AAF46796.1| 1218|Drosophila melanogaster CG6562-PA,
isoform A protein.
Length = 1218
Score = 29.1 bits (62), Expect = 7.9
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Frame = -1
Query: 683 TPSHAGQVTSVCSAVSKSQPTMVALCRRLGSDPVQ----ELTEATMPSEHLREPESEASS 516
+P+ +S S+ K+ PT A+ + P Q + T + P+ + P+ S
Sbjct: 1090 SPTELVSASSSTSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPS 1149
Query: 515 VTIHPIHKNRANRLDGPTTSRRIGQPSGP*LQHGPPRSGPP 393
T + N + + R P+GP G P PP
Sbjct: 1150 DTAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPP 1190
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,516,624
Number of Sequences: 53049
Number of extensions: 1093104
Number of successful extensions: 3838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3832
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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