Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B20
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   6.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.9  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   7.9  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    26   7.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   7.9  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 360 NNVSVTTMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 485
           +N+SVT    L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 258  FEHVRSTAKKKHYAXXNTXSGTPQERECXIRKSCNNVSVTTMEDLSHEEI 407
            F+   +  K+K Y      SG   +    IRK+C N+ +     L H  +
Sbjct: 1709 FDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 183 FNKIMSTLKLTSXVRSGLYSHWRDVFEHVRSTAKKKHYAXXNTXSGTPQERECXIRK-SC 359
           F+K++ST+   S   + L   WRD  +HV    +          S       C       
Sbjct: 384 FSKMLSTI---SNEITNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 360 NNVSVTTMEDLSHEEIVTSYVLAHVAQF 443
           N+ ++ + EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 249 RDVFEHVRSTAKKKHYAXXNTXSGTPQERECXI 347
           R+VFE     A  KH       SGT +++ C +
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRCIL 201


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 406 SSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLTNLK*NFDRIIDRIMDLS 567
           S  LTF   +P  T +V+T   +T    V S  K L N   NF+ +  R  D+S
Sbjct: 193 SGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDIS 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,003
Number of Sequences: 5004
Number of extensions: 54580
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)