Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B14
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    29   0.90 
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   8.4  

>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 18/84 (21%), Positives = 33/84 (39%)
 Frame = +2

Query: 77  NVIXCPXALNVNVKKFKQARVNGGSNYDSLKVAKCLXHLISDAHEWINEIPTVPIYYLAK 256
           N++ C     V  K   Q  +N   N+D  ++       + +  + +N+   VP      
Sbjct: 196 NLLYCQILTGVTAKAM-QLTLNSRPNFDLRRLIGSNEQFLKELCDQLNDYELVPTLNAIS 254

Query: 257 PQPRERAWENQRGKKTLXELDSSL 328
           P P   ++ +Q  +  L E   SL
Sbjct: 255 PLPLRSSFRDQLSQLLLRETPKSL 278


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 588 YICQRITQVF*GQL--SEDRNLAWSKXAKAGLIQMFSTHRDCESTAY 722
           Y+C  +  +  G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,427
Number of Sequences: 5004
Number of extensions: 65131
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)