Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B14
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 583 GGTSVKE*R--RCSKASSARTETSRGAKXQKLA*SRCSVRIGTAKARPIDPFXIKSFNQE 756
           GG + K+    +CSKAS AR   + G+K      ++ S+R+   K +P  P+     + E
Sbjct: 316 GGATTKDLHWPKCSKASIARKTGNPGSKNAAKKPAKSSLRM-AQKQKPDQPWKKNLKDYE 374

Query: 757 VPXKVTXGD 783
              K+  G+
Sbjct: 375 TDRKLAKGE 383


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 487 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLXY 353
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,569
Number of Sequences: 27780
Number of extensions: 382057
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)