Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B13
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   2.5  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   2.5  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   4.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 299 PPRVEPPRSNYTFAGAPFPPRAKVXTPP 216
           PP   PPRSN      P PP+ +   PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 434 AYRPWLFRPVLAQXXRKGTDGAVPPL 511
           A+ PW +R  LAQ  +   +  +PP+
Sbjct: 425 AFEPWYYRKCLAQGGKPDPEARLPPM 450


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 568 FDEQRAALVAVIG*XPLAAARCGLQCSAATPSXKAMLXFLRXXHS 702
           F+E+++AL+ +      A   CG QCS A  S  A L  L+   S
Sbjct: 344 FEEEKSALICIS-----AMTLCGYQCSFAKESFSARLQSLQDTES 383


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 493 VGSLPXXLCKYRPKQPWPVSICVSRKVRHPRSRP 392
           + S P  L K+R + P    IC  RKV+  R +P
Sbjct: 1   MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 115 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVXTFALGGKGAPAKV*FERGGST 291
           G+  D  P PS  R C    H G+ +   +   +TGG       G G  A V F R GS 
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGD-----SGIGKAAAVMFAREGSD 68

Query: 292 LGGPC 306
           L   C
Sbjct: 69  LVISC 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,769
Number of Sequences: 5004
Number of extensions: 36797
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)