Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B11
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    29   3.1  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    29   3.1  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        29   3.1  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 625 GQKLA*STCSXRIGTAKAXPIDPLAIKSFXQEVPXKLP 738
           G  L  ++CS R GT ++ PI P  +    +E P  +P
Sbjct: 454 GVTLLENSCSYRPGTQRSIPIKPTRVIRVREETPVSVP 491


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 625 GQKLA*STCSXRIGTAKAXPIDPLAIKSFXQEVPXKLP 738
           G  L  ++CS R GT ++ PI P  +    +E P  +P
Sbjct: 454 GVTLLENSCSYRPGTQRSIPIKPTRVIRVREETPVSVP 491


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 625 GQKLA*STCSXRIGTAKAXPIDPLAIKSFXQEVPXKLP 738
           G  L  ++CS R GT ++ PI P  +    +E P  +P
Sbjct: 454 GVTLLENSCSYRPGTQRSIPIKPTRVIRVREETPVSVP 491


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 451 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLXY 317
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical
           protein F13D12.5 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 119 YDSLKVAKCLAHLISDAHEWINEIPTVPIYY 211
           +D L +AK   H ++   +W+ +  T  +YY
Sbjct: 181 FDKLHIAKYTGHAVNGLFDWVEDPYTDAVYY 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,697,599
Number of Sequences: 27780
Number of extensions: 341945
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)