Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B10
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   246   2e-66
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   246   3e-66
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  246 bits (603), Expect = 2e-66
 Identities = 120/242 (49%), Positives = 157/242 (64%)
 Frame = +3

Query: 33  MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
           MSH KF  PR    G L +K         +  P+    +      F      +TH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
           NW+K KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QK AH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
           MEIQ+NGG++ DKV+WA  H EK + + S F Q EMID I            +RW T +L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 753 PR 758
           PR
Sbjct: 239 PR 240



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
           P K H+GL KVACIG WHP+ V +TV RAG  G+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  246 bits (602), Expect = 3e-66
 Identities = 119/242 (49%), Positives = 157/242 (64%)
 Frame = +3

Query: 33  MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
           MSH KF  PR    G L +K         +  P+    +      F      +TH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
           NW+K KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QK AH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
           MEIQ+NGG++ DKV+WA  H EK + + S F Q EMID I            +RW T +L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 753 PR 758
           PR
Sbjct: 239 PR 240



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
           P K H+GL KVACIG WHP+ V +TV RAG  G+
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 156
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,760
Number of Sequences: 5004
Number of extensions: 67563
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)