Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_B10
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 239 2e-63
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 238 5e-63
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 3.6
11_01_0710 - 5830475-5830595,5831498-5834124 29 4.7
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184... 29 4.7
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 6.3
01_05_0125 - 18382402-18382761,18382863-18383036 28 8.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 239 bits (586), Expect = 2e-63
Identities = 119/243 (48%), Positives = 155/243 (63%), Gaps = 1/243 (0%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKF PR G L +K + P+ + C F +TH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRQKXAH 569
NW K KKKAFTK + K+ + G+K I M +Y S+VRVIAHTQ++ +K +QK AH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 570 IMEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXK 749
+MEIQ+NGGTI DKV + EK IPVD+VF + EMID I +RW +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 750 LPR 758
LPR
Sbjct: 241 LPR 243
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K H+GL KVACIG WHP+RVS+TV RAG G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGY 275
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 238 bits (582), Expect = 5e-63
Identities = 119/243 (48%), Positives = 154/243 (63%), Gaps = 1/243 (0%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKF PR G L +K + P+ + C F +TH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRQKXAH 569
NW K KKKAFTK + K+ + G+K I M +Y SVVRVI HTQ++ +K +QK AH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
Query: 570 IMEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXK 749
+MEIQ+NGGTI DKV + EK IPVD+VF + EMID I +RW +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 750 LPR 758
LPR
Sbjct: 241 LPR 243
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K H+GL KVACIG WHP+RVS+TV RAG G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGY 275
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 467 NXKRFQXXDPLL*CCKSHCPHSNEAVKTATKEXSHYGNP 583
N +RF DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 378 RRFYKNWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYC 503
RRF + KC K + + ++ +LGR + K+F +IR C
Sbjct: 163 RRFTRLMQKCADKLGAEPALEFFGKLGRDTGAKEFNALIRIC 204
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 688 QSIISXWANTESTGIGFSRCXVAHFTLSSMVPPLSWISIM 569
+S+IS W + TG S C V + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>11_01_0239 -
1842576-1842741,1843264-1843379,1843667-1843738,
1844057-1844143,1844479-1844582,1845250-1845307,
1845582-1845630,1846252-1846577,1846645-1846785
Length = 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 189 LTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 368
+++ V+E +RP K+ K+ P + V + GY+ G+ + L H
Sbjct: 292 VSYDVKEIERPEEKMVKRMTGCHARRENLDPQLQVALKGYM-VARGVNSKLASLLHHHLV 350
Query: 369 DCRRRFYKNWYKCKKKAFTK 428
+ R Y NW K ++ F+K
Sbjct: 351 EKERWQYMNWLKTLEEMFSK 370
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 567 HIMEIQLNGGTIEDKVKWATXHLEKPIPVDS 659
H++E + N ++++K+K H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 381 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 277
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,246,179
Number of Sequences: 37544
Number of extensions: 476109
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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