Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_B10
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 286 2e-77
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 286 2e-77
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 286 2e-77
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 286 2e-77
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 194 5e-50
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 194 5e-50
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 152 4e-37
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 152 4e-37
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.8
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 29 4.2
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 286 bits (701), Expect = 2e-77
Identities = 136/242 (56%), Positives = 166/242 (68%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
+EIQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KL
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 753 PR 758
PR
Sbjct: 241 PR 242
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 274
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 286 bits (701), Expect = 2e-77
Identities = 136/242 (56%), Positives = 166/242 (68%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
+EIQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KL
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 753 PR 758
PR
Sbjct: 241 PR 242
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 274
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 286 bits (701), Expect = 2e-77
Identities = 136/242 (56%), Positives = 166/242 (68%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
+EIQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KL
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 753 PR 758
PR
Sbjct: 241 PR 242
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 274
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 286 bits (701), Expect = 2e-77
Identities = 136/242 (56%), Positives = 166/242 (68%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHI 572
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 573 MEIQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKL 752
+EIQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KL
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240
Query: 753 PR 758
PR
Sbjct: 241 PR 242
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 241 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 274
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 194 bits (474), Expect = 5e-50
Identities = 92/168 (54%), Positives = 114/168 (67%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQM 536
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 193 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 226
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 VFAQXEMIDCIXXXXXXXXXXXXSRWHTXKLPR 758
V A +MID I SRWHT KLPR
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPR 194
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 194 bits (474), Expect = 5e-50
Identities = 92/168 (54%), Positives = 114/168 (67%)
Frame = +3
Query: 33 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRLTHVVREP 212
MSHRKFSAPR G +K + + P+ + F +TH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQM 536
NW K KKKAFTK + KWQDE G+K I DF + +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 193 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 226
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 VFAQXEMIDCIXXXXXXXXXXXXSRWHTXKLPR 758
V A +MID I SRWHT KLPR
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPR 194
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 152 bits (368), Expect = 4e-37
Identities = 71/120 (59%), Positives = 86/120 (71%)
Frame = +3
Query: 399 YKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHIME 578
Y+ + KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH++E
Sbjct: 25 YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 84
Query: 579 IQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKLPR 758
IQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KLPR
Sbjct: 85 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPR 144
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 143 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 176
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 49 FQHPAHGSMGFYPKKRSRRHRGKVKAFPK 135
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 152 bits (368), Expect = 4e-37
Identities = 71/120 (59%), Positives = 86/120 (71%)
Frame = +3
Query: 399 YKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHIME 578
Y+ + KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++RQK AH++E
Sbjct: 25 YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 84
Query: 579 IQLNGGTIEDKVKWATXHLEKPIPVDSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXKLPR 758
IQ+NGGTIE KV WA HLEK + VD+VFAQ EMID I SRWHT KLPR
Sbjct: 85 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPR 144
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +1
Query: 754 PVKXHKGLXKVACIGTWHPSRVSFTVXRAGXKGF 855
P K HKGL KVACIG WHPSRV+FTV RAG KGF
Sbjct: 143 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 176
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 49 FQHPAHGSMGFYPKKRSRRHRGKVKAFPK 135
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 273 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 401
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 254 GCHHHRDSSDGLCRCCWIH*DPSWTTRSVDCLGGAYV*RLSTSLLQKLVQMQEEGF 421
GC + G C W + DPS T + DC +Y ++ L + V M+ GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,354
Number of Sequences: 27780
Number of extensions: 403815
Number of successful extensions: 994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -