Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_B09
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 32 0.50
05_05_0175 + 22966151-22967614 31 1.2
01_06_1224 - 35508842-35510404 30 2.7
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940... 29 6.2
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 29 6.2
01_05_0227 - 19512866-19514983 29 6.2
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 28 8.1
06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422 28 8.1
04_01_0041 - 464695-464850,467485-469029 28 8.1
>07_01_0373 + 2783596-2784933
Length = 445
Score = 32.3 bits (70), Expect = 0.50
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = -3
Query: 291 EEEKALTKEGMAEAAETTKGTISSMNRS 208
E+++ LTK G + +ET+KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>05_05_0175 + 22966151-22967614
Length = 487
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 174 RIGKEGGEX-ECELINVGGRSYPEEHKGGVTTRRNRGKALSDKEVRALLL 28
R G GGE E VGG Y E +GG ++ R + +SD V A LL
Sbjct: 19 RRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGHVVAQLL 68
>01_06_1224 - 35508842-35510404
Length = 520
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 732 PPSPAISATSTDHQXPDSIHHHPDLHPFHQSLTP 833
P SP+ SA S D P HP P H L+P
Sbjct: 2 PSSPSSSAASVDAPPPPPELSHPPYSPSHADLSP 35
>09_02_0439 +
9406451-9407178,9407225-9407603,9407887-9408038,
9408432-9408504,9409255-9409275
Length = 450
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 348 GKGCISMERADGLSV*GGLEEEKALTKEGMAEAAETTKGTISSMNRSSEIQLQNTLYRR 172
G+G + A G+ GG+ + AL G+ A TT+ S S+EI N +YR+
Sbjct: 388 GRGVVGAGGAGGVG--GGVLDGSALGAGGVCMVASTTRYKSFSPVGSNEIDGSNCMYRQ 444
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = -3
Query: 291 EEEKALTKEGMAEAAETTKGTISSMNRSSEIQLQNTLYR--------RIGKEGGEXECEL 136
E++ + +G A E+ K I+++ + +QL + +Y R + E +
Sbjct: 35 EQKISKISKGSTSAPESAKRKITTVEGVNMVQLLSLIYTYTSLYTNARTSEVSKEQKISK 94
Query: 135 INVGGRSYPEEHKGGVTTRRNRGKAL 58
I+ G S PE K +TT + KAL
Sbjct: 95 ISKGSTSAPESAKRKITTVAGQDKAL 120
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 660 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 568
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 194 NWISDDLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMD 334
+WIS + + + L + +S +P +VNAF DNPS D
Sbjct: 313 DWISAETSGKYNITLAATDSSQLPPIVNAFEVYGRIPLDNPSTFPTD 359
>06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422
Length = 241
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 341 VAYPWNAQTGYQFEGVWKKRKH*PRREWPKRQKRLKAQFLP*IGHQKSSCKTPS 180
+A P+ QTG + E K+ K+ P++ +R K +L GH + + PS
Sbjct: 105 IATPYRPQTGGKVETYNKQIKNIPQKAVNERGKHGSISYLMLFGHVEPHTRRPS 158
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 443 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKXYRDAYLVNLEAVVFPS-APSLKIPV 619
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 620 TVD 628
+D
Sbjct: 100 PLD 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,012,236
Number of Sequences: 37544
Number of extensions: 436635
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -