Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B04
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1276 + 25811020-25811512,25812134-25812541,25814682-258148...    32   0.67 
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    32   0.67 
07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    31   0.88 

>08_02_1276 +
           25811020-25811512,25812134-25812541,25814682-25814878,
           25815412-25815575,25815960-25816056,25816102-25816179,
           25817840-25817919,25817961-25818082,25818203-25818276
          Length = 570

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 620 SSSSHWLKNDSCRNYPLVMTDPLFDRLCDRSFT*DXLIS 504
           SSS  W+++D    +PL   D L+++ C+R    D +I+
Sbjct: 120 SSSREWMESDVGDGFPLCGFDSLYEKYCERMAVFDKMIT 158


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 402 FFVAQIFHRGNRDVITRLPYXAFTFLWRTTXSIXICIMFFFLLYFEHVQTRHASESRV 229
           F V+ +    NR  I +LP+   + LW       +C + F+++Y  H + +  S  R+
Sbjct: 131 FTVSNVARGSNRLAILQLPFTLLSRLW--VHFACLCFISFYVVYLLHKEHKEMSSRRI 186


>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 162 TSFYLVFNKIMSTLKLTSXVRSGLYSHWRD 251
           TS Y +FNK+ STL   S V SG ++  RD
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRD 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,423,311
Number of Sequences: 37544
Number of extensions: 343483
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)