Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B04
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    29   5.5  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    29   5.5  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    29   5.5  

>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 677 ISATIHSXMXWFTVLVPYNSSSSHWLKNDSCRNYPLVMTDPLFDRLCDRSFT 522
           IS   H  +  +T     + +   +L  D   N P +  +PL DR+ D  FT
Sbjct: 39  ISVNKHQILRLYTRFASLDKNGQGYLSRDDFLNVPELAVNPLGDRIIDAFFT 90


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 483 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRDVI---TRLPYXAFTFLWR 319
           C ++     M S+V++ N+SQN++ DD    Q+F    R  +      P+ +  FL R
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVR 228


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 483 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRDVI---TRLPYXAFTFLWR 319
           C ++     M S+V++ N+SQN++ DD    Q+F    R  +      P+ +  FL R
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVR 228


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 483 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRDVI---TRLPYXAFTFLWR 319
           C ++     M S+V++ N+SQN++ DD    Q+F    R  +      P+ +  FL R
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVR 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,955
Number of Sequences: 27780
Number of extensions: 327189
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)