Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B02
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   3.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   3.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.1  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = +2

Query: 392 LYRLXQYQDCYNLYRDLLKNTTDEYEDERKXXXXXXXXXXXXXXPTSELPQFDENTYELA 571
           L+R   YQD Y  Y + L+   D  E   K              P   L   D N   + 
Sbjct: 233 LFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSD-NALAID 291

Query: 572 YNSGSTLAMRGKYNEAL 622
            +    L +R K +EAL
Sbjct: 292 SSYLKGLKVRAKAHEAL 308


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 172 ESISLQSGMLSPTPQLQGGSSNINQCQE 255
           E++ L +G L P P+ + G S+IN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 380 RAQILYRLXQYQDCYNLYRDLL 445
           +AQ+L +L +YQ+  N+++DL+
Sbjct: 506 KAQVLEQLEKYQESLNIWKDLI 527


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 94  YLIQDKPEARLFCPVG*HFFDNTAKKRHFCS 2
           +L++ KP    FC    +F DNT+  R F S
Sbjct: 18  FLVKSKPLYISFCTCKAYFEDNTSLSRRFFS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,963
Number of Sequences: 5004
Number of extensions: 50746
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)