Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_B02
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    83   2e-16
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477     30   2.1  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 9/228 (3%)
 Frame = +2

Query: 131 KLQGKILQIAPNEQKAFHCKVVCSLQLHNFKEALATLTNAKNSALAADLLFEKAYAQYRL 310
           K+  ++L  AP ++ A  CKVV  ++    ++ALA +  A+   L  DL + KAY  YR 
Sbjct: 43  KVADQVLAAAPGDEDAVRCKVVAHIKSDAIEKALAAIRAAER--LPIDLSYCKAYCYYRQ 100

Query: 311 NSPKEALQTVDSAPELTPALKELRAQILYRLXQYQDCYNLYRDLLKNTTDEYEDERKXXX 490
           N  +EAL  +    E T A+ +L +QI YRL +  DC N Y  L K   +  + +     
Sbjct: 101 NKLQEALDLLKGQEE-TSAILQLESQIYYRLGRMNDCMNSYEKLQKFKVESMDLKINIIA 159

Query: 491 XXXXXXXXXXXPTSELPQ---------FDENTYELAYNSGSTLAMRGKYNEALSXLXRAE 643
                        +   Q          D  ++ELAYNS  +L    KY+EA   L  A+
Sbjct: 160 ALVAAGRASEVQATMKAQKVDLSSRALRDTRSFELAYNSACSLIENKKYSEAKEQLDLAK 219

Query: 644 QACSXTVIHDGXTDEXANXXPAXIXGPQAYCLQPNNXEKEPAXIYXNI 787
           +     ++ D   D+      A +    AY  Q     +E    Y NI
Sbjct: 220 RIGKEELMVDEYGDDDIEYELAPVSAQLAYVHQLQGQTQEAMETYNNI 267


>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
          Length = 668

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 326 ALQTVDSAPELTPALK---ELRAQILYRLXQYQDCYNLYRDLL 445
           AL  VD+A EL+P ++   ELR + L  L +Y+D   + RD +
Sbjct: 49  ALGLVDAALELSPRMESALELRGRALLSLRRYRDVAEMLRDYI 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,798,896
Number of Sequences: 37544
Number of extensions: 334442
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)