Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_A23
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   6.2  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 636 CPFAPREVSVLAELALXHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 460
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 459 AWNETPCARRYYRPRTASA 403
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 99  QARVNGGSNYDSLKVAKCLAHLISDAH 179
           +A  + GS+    ++ +CL H I +AH
Sbjct: 133 RAACHSGSSLTKSRLMRCLHHDIENAH 159


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 333 VGDCFARSSLKNHYFHCFI 389
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 333 VGDCFARSSLKNHYFHCFI 389
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 521 SRTLPGGE--FDWGGTSVKE*RRCXKASSARTETSRGA 628
           +  LPG    F+    SVKE RR   A  ++ +  RGA
Sbjct: 300 TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGA 337


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 354 SSLKNHYFHCFITYSVGRK 410
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 521 SRTLPGGE--FDWGGTSVKE*RRCXKASSARTETSRGA 628
           +  LPG    F+    SVKE RR   A  ++ +  RGA
Sbjct: 11  TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGA 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,859
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)