Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_A03
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    27   4.5  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   4.5  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   6.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   7.9  

>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 334 HHSLWPAHSVGLEGQISRRHTRQRDDIPSP 423
           HH  + A+ V +EGQI  + T Q D+   P
Sbjct: 104 HHCHYSANPVNVEGQIGFKITVQEDEESDP 133


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 544 RHDVCKRSV--RSRSPHPLEIPSGYSITILXDSR 639
           R DV K+SV   S S  PL++  GYS+ +   SR
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVHLKDQSR 94


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 383 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 490
           LG++    M +  H   + D+   +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 509 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 613
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 565 SVRSRSPHPLEIPSGYSITILXDSRRSPL 651
           S+ SR+P+ L  PS Y       +RRSPL
Sbjct: 313 SMMSRTPNTLNRPSNYRSHSSMGTRRSPL 341


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 257 KRGRP-PNITSSIPLRSRRANTSAVSP 334
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,084
Number of Sequences: 5004
Number of extensions: 67958
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)