Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P21
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 35 0.011
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 31 0.24
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 0.75
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 29 0.99
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 1.7
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 27 3.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.0
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.0
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 27 4.0
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 4.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 4.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 7.0
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.0
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 9.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 9.2
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 25 9.2
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.2
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.2
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.2
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 35.1 bits (77), Expect = 0.011
Identities = 31/129 (24%), Positives = 57/129 (44%)
Frame = -3
Query: 606 KVRAKKSKNSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTKESIEN 427
+V A+ S N +RR+ PE N R LR+R TP E ++D ++ E+
Sbjct: 1374 RVEARSSANERKQEERRRKTTPEGNRRALRTR-------TPTNEDIQRSDSKLR----ED 1422
Query: 426 EKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTR 247
+ R + R + LR ++ R R+ + + + A+++ +Q+ D+ R
Sbjct: 1423 QSRDRTPQSRSFTNENNDNLRSVSRHTR--REPQQAQNLNARREHE---SQKSDRWRQNG 1477
Query: 246 SRKRRLEVS 220
+ R VS
Sbjct: 1478 NVNRNPRVS 1486
Score = 29.1 bits (62), Expect = 0.75
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -2
Query: 502 KHPRHSRG*EARKGRR*SHQGVDRERKNGPRHSQEEIRGDNQAGAQGEGAKRTRHETSQR 323
+ P+ ++ AR R Q DR R+NG + + +N E + H TS
Sbjct: 1451 REPQQAQNLNAR--REHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSND 1508
Query: 322 TQNDQSEE 299
+ D+ E
Sbjct: 1509 NKRDEVTE 1516
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 30.7 bits (66), Expect = 0.24
Identities = 24/102 (23%), Positives = 46/102 (45%)
Frame = -3
Query: 594 KKSKNSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTKESIENEKTV 415
+ ++N+P + +D + N ++ PA P VE + +G E + K+V
Sbjct: 378 RPNENTPADWSKSYIDYSDPNA-EVAKPAPVVAPAAPTVE--AEVNG---VEDSKKRKSV 431
Query: 414 RVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKET 289
+ K + E K R K + + ++ E+K K KKK++
Sbjct: 432 ESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKS 473
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 477 EKRGKADGRVTKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKK 298
E AD RVT E + + ++ K + I R Q RAT E+ K K+
Sbjct: 191 ENASVADSRVTAEETSTKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKEQHAKKPKR 250
Query: 297 KET 289
K T
Sbjct: 251 KHT 253
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 28.7 bits (61), Expect = 0.99
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = -3
Query: 549 DAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTKESIENEKTVRVTRKRK--YEEITK 376
DA ++E + R K S+ +K+ K T +++ +K ++T+K+K +++ K
Sbjct: 156 DASSSDEAKREKRKKHSS------KKKSKKKTS-TGSALDPKKLEKITKKKKKEHKKKDK 208
Query: 375 PVLREKGQNGRATRQASERKTIKAKKKETLT 283
+K ++G + ++ ++K IK K K T
Sbjct: 209 ESSSKKRKSGSSDKEEKKKKKIKLKDKPEST 239
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 1.7
Identities = 26/137 (18%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = -3
Query: 609 PKVRAKKSKNSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKA-DGRVTKESI 433
PK RA+K++ + ++ + +A E + S+G ++ EKR A + + +E +
Sbjct: 4 PKKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERERL 63
Query: 432 ENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKK----KETLTLNQQED 265
E E+ + K + +K ++ + + + A+ + L+LN
Sbjct: 64 EKEEMESLPSKG--GKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSS 121
Query: 264 QMRMTRSRKRRLEVSLS 214
+ ++ R +RR + +L+
Sbjct: 122 KDKIDRHPERRFKAALT 138
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = -3
Query: 405 RKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLE 226
R+ K+EEI KP+L + Q + + +R+ K K L QE ++ M ++R
Sbjct: 59 RQAKFEEIVKPILSKAFQRLEDSISSLQRQEDSLKTKYEL----QEARLDMLKNRPATSA 114
Query: 225 VSL---SPSEVKSIV 190
S+ S ++K+I+
Sbjct: 115 FSVTTESSEQLKAII 129
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 339 TRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSE 205
T E I K+ T T+N+ +Q+ M +S E SLS +E
Sbjct: 1611 TEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAE 1655
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 4.0
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Frame = -3
Query: 561 RRKVDAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTK-ESIENEKTVRVTRKRKYEE 385
+ D + +R+L+SR T +E + V K E I N KT + +
Sbjct: 95 QENADLYRSQQRKLKSRWDSQTDILSQIESTKASLAEVHKAEEISNLKTSITHLDEEIQI 154
Query: 384 ITKPVLREKGQNGRATRQAS-----ERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEV 223
+ + + Q ++ E+K + + LTL +Q D S ++R+EV
Sbjct: 155 LQEKLAIVTNQRNTLVKRLQTYDNLEKKKALSMEDRLLTLQEQYDAHANVSSLEKRMEV 213
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -3
Query: 486 PVVEKRGKADGRVTKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIK 307
PVV + + + E + ++K T+P EKG+ AT ++ +KT K
Sbjct: 87 PVVGEHVHTETQSYNEPYMQRHRIEDAIEKKMTSETQPSTDEKGRKVSATENSAPKKTDK 146
Query: 306 AKKKETLTLNQQEDQM 259
K N +Q+
Sbjct: 147 EKSSGETAGNILREQI 162
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 450 VTKESIENEKTVRVTRKR-KYEEITK-PVLREKGQNGRATRQASERKTIKAKKKETLTLN 277
+T+E K R R KYEE + E + +TRQ SER + A++ + +
Sbjct: 40 ITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTSERPPLSAEEAKRIREV 99
Query: 276 QQEDQMRMTRSRKR 235
+++D++ ++ ++
Sbjct: 100 KEKDRLESKKNERQ 113
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 567 RKRRKVDAPEANERQLRSRGKR 502
RKRRKV PE + LR RG++
Sbjct: 80 RKRRKVRKPEIVKPTLRKRGRK 101
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = -3
Query: 453 RVTKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQ 274
+V +E +E E+ + +K R K +NG A+++ + R+T+ + E L ++
Sbjct: 76 QVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGDE 135
Query: 273 QE 268
++
Sbjct: 136 ED 137
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -3
Query: 489 TPVVEKRGKADGRVTKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTI 310
+PV K+ K KES + EK ++K+K ++ K L++K + + ++++
Sbjct: 121 SPVSSKKVKVRKTSGKESSKREK----SKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKR 176
Query: 309 KAKKKET 289
K + KE+
Sbjct: 177 KVRDKES 183
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 447 TKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLN--- 277
+K+S + E + + K K +PV+ K + ++ + K +K+ KKE L
Sbjct: 67 SKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHKVKKVKSPKKEKLVGKNPA 126
Query: 276 QQEDQMRMTRSRKRRLEVSLSPSEVK 199
++ED + ++K + S +PS +K
Sbjct: 127 EKEDTTDVEDTQKLEQKHSTTPSSLK 152
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 462 ADGRVTKESIENEKTVRVT-RKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETL 286
+D V ++ E+ +K++ EEI + E RQ +ER+ K
Sbjct: 40 SDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQGKTLAE 99
Query: 285 TLNQQEDQMRMTRSR 241
TL +++DQ+ +R
Sbjct: 100 TLAEEDDQIDANDTR 114
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -3
Query: 345 RATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEVKS 196
R + E+K +++ +KE + N + Q+ + ++ R+ SPS++KS
Sbjct: 21 RQLNEIQEKKRLRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSKLKS 70
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 335 LVARPFCPFSLSTGLVISSYFLLRVTRTVFSFSIDSL 445
L+A F F L GLVI F+L + +D+L
Sbjct: 1930 LLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTL 1966
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 451 SHQGVDRERKNGPRHSQEEIRGDN---QAGAQGEGAKRTRHETSQRTQNDQSEEK 296
SH+ D E + +EE+ DN ++ + + R+R S+ T ++E K
Sbjct: 149 SHELSDEENSDSSNEREEEVEDDNRSVESYSSSDYQARSRRRFSEETTQRRAEIK 203
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 444 KESIENEKTVRVTRKRKYEEI 382
+E IE E T++ + ++KYEEI
Sbjct: 162 RERIEWENTIQTSSQQKYEEI 182
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 9.2
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = -3
Query: 582 NSPVPRKRRKVDAPEANERQ---LRSRGKRSTPATPVVEKRGKADGRVTKESIENEKTVR 412
N P +R DA EA+E + +++ R V+E R D +K++ N ++
Sbjct: 616 NGPKRSLKRPDDAVEADEIEGPRKKAKNDREARIASVMEGREGRDKFSSKKAGFNPTSLS 675
Query: 411 VTRKRKYEEITKPVLREKGQNGRATRQASE--RKTIKAKKKE 292
RK++ + + KG+ GR+ Q + R+ + +K++
Sbjct: 676 NKRKQRNKNFMMIKHKLKGKAGRSLVQKQKVLREHVAREKRK 717
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 588 SKNSPVPRKRRKV-DAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTKES-IENEKTV 415
S +S P + V + A+E+QL ++TPA ++ +A+ VT + + +EK
Sbjct: 326 SLDSKQPSSTKSVAEVKVADEKQLPDASSQATPADSKEPRKEEAEKPVTSATEVSSEKVE 385
Query: 414 RV 409
+V
Sbjct: 386 KV 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,716
Number of Sequences: 5004
Number of extensions: 44279
Number of successful extensions: 201
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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