Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P18
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    23   7.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    23   7.1  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 653 PPPPPPPPXXXXXXXXXXXXXXGDTPKNPPP 561
           PPPPPPPP                T   PPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPP 796


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 653 PPPPPPPPXXXXXXXXXXXXXXGDTPKNPPP 561
           PPPPPPPP                T   PPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPP 796


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 23.0 bits (47), Expect(3) = 7.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = -1

Query: 647 PPPPPPXXXXXXXXXXXXXXGDTPKNPPPXXG 552
           PPPPPP                 P  PP   G
Sbjct: 358 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 389



 Score = 21.0 bits (42), Expect(3) = 7.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 653 PPPPPP 636
           PPPPPP
Sbjct: 327 PPPPPP 332



 Score = 21.0 bits (42), Expect(3) = 7.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 650 PPPPPP 633
           PPPPPP
Sbjct: 344 PPPPPP 349


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 23.0 bits (47), Expect(3) = 7.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = -1

Query: 647 PPPPPPXXXXXXXXXXXXXXGDTPKNPPPXXG 552
           PPPPPP                 P  PP   G
Sbjct: 348 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 379



 Score = 21.0 bits (42), Expect(3) = 7.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 653 PPPPPP 636
           PPPPPP
Sbjct: 317 PPPPPP 322



 Score = 21.0 bits (42), Expect(3) = 7.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 650 PPPPPP 633
           PPPPPP
Sbjct: 334 PPPPPP 339


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 653 PPPPPPPPXXXXXXXXXXXXXXGDTPKNPPP 561
           PPPPPPP                  P+ PPP
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPP 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,015,902
Number of Sequences: 27780
Number of extensions: 76273
Number of successful extensions: 1847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)