Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P17
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.58 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   0.97 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.6  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect(2) = 0.58
 Identities = 12/47 (25%), Positives = 14/47 (29%)
 Frame = +3

Query: 552 PPPPPPPXXXKXXXXGXXXXXXXXKKKKKKKKXXXXPPPPPPXXPXK 692
           PPPPPPP                        +    PPP  P  P +
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPR 284



 Score = 21.8 bits (44), Expect(2) = 0.58
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 525 FXXKKKXXXPPPPPPP 572
           +  K+    P PPPPP
Sbjct: 227 YTPKQADPLPAPPPPP 242


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 0.97
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 552 PPPPPPP 572
           PPPPPPP
Sbjct: 762 PPPPPPP 768



 Score = 23.0 bits (47), Expect(2) = 0.97
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 660 PPPPPPXXP 686
           PPPPPP  P
Sbjct: 775 PPPPPPPPP 783


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect(2) = 2.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 534  KKKXXXPPPPPPP 572
            K     PPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 21.4 bits (43), Expect(2) = 2.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 552  PPPPPPPXXXK 584
            PPPPPP    K
Sbjct: 1097 PPPPPPAEVEK 1107


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 552 PPPPPPPXXXKXXXXGXXXXXXXXKKKKKKK 644
           PPPPPPP   +              KK+K K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,248
Number of Sequences: 5004
Number of extensions: 20302
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)