Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P15
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 30 1.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.3
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 30 2.3
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 30 2.3
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 29 3.1
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 4.1
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 29 5.4
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 29 5.4
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 29 5.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 24 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 24 6.3
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 25 8.2
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 28 9.4
AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical ... 28 9.4
AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical ... 28 9.4
AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical... 28 9.4
AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein... 28 9.4
AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like ... 28 9.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 9.6
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 644 PPPPPPPXXXGGGGXXXXXG 585
PPPPPPP G GG G
Sbjct: 154 PPPPPPPLMGGSGGHWRSGG 173
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP G GG
Sbjct: 649 PPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP G GG
Sbjct: 475 PPPPPPPPPSGAGG 488
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 644 PPPPPPPXXXGGG 606
PPPPPPP GGG
Sbjct: 64 PPPPPPPAPIGGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP GGG
Sbjct: 63 PPPPPPPPAPIGGG 76
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 644 PPPPPPPXXXGGG 606
PPPPPPP GGG
Sbjct: 64 PPPPPPPAPIGGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP GGG
Sbjct: 63 PPPPPPPPAPIGGG 76
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 641 PPPPPPXXXGGGG 603
PPPPPP GGGG
Sbjct: 34 PPPPPPSPCGGGG 46
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPP P GGGG
Sbjct: 32 PPPPPSPCGCGGGG 45
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPP GGGG
Sbjct: 31 PPPPPPACGCGGGG 44
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 604 PPPPXXXGGGGGGGXF 651
PPPP G GGGGG +
Sbjct: 32 PPPPPACGCGGGGGGY 47
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 644 PPPPPPPXXXGGGGXXXXXG 585
PPPPPPP G GG G
Sbjct: 66 PPPPPPPAFGGLGGGAAYPG 85
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP GG G
Sbjct: 65 PPPPPPPPAFGGLG 78
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 644 PPPPPPPXXXGGGGXXXXXG 585
PPPPPPP G GG G
Sbjct: 66 PPPPPPPAFGGLGGGAAYPG 85
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP GG G
Sbjct: 65 PPPPPPPPAFGGLG 78
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 644 PPPPPPPXXXGGGGXXXXXG 585
PPPPPPP G GG G
Sbjct: 66 PPPPPPPAFGGLGGGAAYPG 85
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 644 PPPPPPPXXXGGGG 603
PPPPPPP GG G
Sbjct: 65 PPPPPPPPAFGGLG 78
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 644 PPPPPPP 624
PPPPPPP
Sbjct: 307 PPPPPPP 313
Score = 23.0 bits (47), Expect(2) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 641 PPPPPPXXXGGGG 603
PPPPPP G G
Sbjct: 327 PPPPPPSRFGPPG 339
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 644 PPPPPPP 624
PPPPPPP
Sbjct: 297 PPPPPPP 303
Score = 23.0 bits (47), Expect(2) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 641 PPPPPPXXXGGGG 603
PPPPPP G G
Sbjct: 317 PPPPPPSRFGPPG 329
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 25.4 bits (53), Expect(2) = 8.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 604 PPPPXXXGGGGGG 642
P PP GGGGGG
Sbjct: 272 PQPPPQQGGGGGG 284
Score = 21.0 bits (42), Expect(2) = 8.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 625 GGGGGGG 645
GGGGGGG
Sbjct: 313 GGGGGGG 319
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 644 PPPPPPPXXXGGGGXXXXXG 585
PPPPPPP G G G
Sbjct: 535 PPPPPPPRSSGANGNRNGGG 554
>AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical
protein Y111B2A.8 protein.
Length = 582
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 653 KKXPPPPPPPXXXGGGG 603
+K PPPPP GGGG
Sbjct: 509 QKPPPPPPQSQQAGGGG 525
>AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 650 KXPPPPPPPXXXGGG 606
+ PPPPPPP GG
Sbjct: 15 RPPPPPPPPGSEAGG 29
>AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 650 KXPPPPPPPXXXGGG 606
+ PPPPPPP GG
Sbjct: 15 RPPPPPPPPGSEAGG 29
>AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein
protein.
Length = 802
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 650 KXPPPPPPPXXXGGG 606
+ PPPPPPP GG
Sbjct: 15 RPPPPPPPPGSEAGG 29
>AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like
(grd related) protein20 protein.
Length = 163
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 650 KXPPPPPPPXXXGGG 606
K PPPPPPP G G
Sbjct: 61 KLPPPPPPPCGGGCG 75
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 23.8 bits (49), Expect(2) = 9.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 644 PPPPPPP 624
PPPPPPP
Sbjct: 561 PPPPPPP 567
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 641 PPPPPPXXXG 612
PPPPPP G
Sbjct: 589 PPPPPPPPGG 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,302,607
Number of Sequences: 27780
Number of extensions: 120241
Number of successful extensions: 4152
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2370
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -