Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P14
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   0.96 
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 0.96
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 498 PPPPPPXXXKK 466
           PPPPPP   KK
Sbjct: 25  PPPPPPGYVKK 35



 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 497 PPPPPPXXXKK 465
           PPPPPP   KK
Sbjct: 25  PPPPPPGYVKK 35



 Score = 23.0 bits (47), Expect(2) = 0.96
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 504 GXPPPPPP 481
           G PPPPPP
Sbjct: 7   GNPPPPPP 14



 Score = 22.2 bits (45), Expect(2) = 1.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 509 GXXXPPPPPP 480
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 252 PPSPGNFPPXLENXPQFFXEP 190
           PPSPG   P     P FF  P
Sbjct: 495 PPSPGIVTPPQRTSPSFFVSP 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,549
Number of Sequences: 5004
Number of extensions: 21729
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)