Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P09
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   0.80 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   3.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 371 PXXGGXTPPPPPXXNFPXGGXXXGGXGXXKKKKXXPXPPPPPP 499
           P  G   PPPPP  + P  G         +     P PPP  P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 392 PPPPPXXNFPXGGXXXGGXGXXKKKKXXPXPPPPP 496
           PPPPP  +    G    G G        P PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG--SSNSSLPPPPPPP 343



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
 Frame = +2

Query: 359 KXSPPXXGGXT----PPPPPXXNFPXGGXXXGGXGXXKKKKXXPXPPPP 493
           +  PP   G +    PPPPP    P      G      + +  P PPPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect(2) = 0.80
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 482 PPPPPPXXXXGXXXKKKKXGGGXXFFF 562
           PPPPPP        K +  G     F+
Sbjct: 371 PPPPPPPELLNHSPKSRPLGDKPYLFY 397



 Score = 23.4 bits (48), Expect(2) = 0.80
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 476 PXPPPPPP 499
           P PPPPPP
Sbjct: 370 PPPPPPPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +2

Query: 371 PXXGGXTPPPPPXXNFPXGGXXXGGXGXXKKKKXXPXPPPPPPXXXXG 514
           P  GG  PPPPP            G G        P PPPPPP    G
Sbjct: 756 PIMGGPPPPPPPPG--------VAGAGP-------PPPPPPPPAVSAG 788


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 476 PXPPPPPP 499
           P PPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 22.2 bits (45), Expect(2) = 3.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 380 GGXTPPPPP 406
           GG  PPPPP
Sbjct: 303 GGLPPPPPP 311


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 392 PPPPPXXNFPXGGXXXGGXGXXKKKKXXPXPPPPPP 499
           PPPPP  N+P            ++    P   P PP
Sbjct: 207 PPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,360
Number of Sequences: 5004
Number of extensions: 17836
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)