Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P08
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836           30   2.1  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    29   2.8  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    28   6.4  
01_02_0098 - 11087875-11089110,11091744-11092022                       28   8.5  

>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
          Length = 526

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
 Frame = -2

Query: 335 AQVAEGETSAVAAHPVRENRADR---LD-----GTEAGRRVRQTTRSRLQHGLPILEPPR 180
           A ++E  T AV   PV  N A R   LD     G    R + + + + + +GL  + PP 
Sbjct: 81  AYLSEPVTDAVITVPVYFNNAQREATLDAAAIAGLNVMRIINEPSAAAIAYGLDKMPPPA 140

Query: 179 SGCTCARVRRLVGDCAVAGPTRDVNV 102
           SG   A    L+ D  + G T DV++
Sbjct: 141 SGADAAGRTVLIFD--LGGGTLDVSL 164


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 PATAQSPTRRRTLAQVQPERGGSNIGSP 207
           PA A SPTRRR L  + P    SN GSP
Sbjct: 31  PAAAPSPTRRRRL--LAPLAAASNSGSP 56


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 18  LRLHSDLEWNIKGKPKPLIYNTLKLWNTHVDVSGWTCHSTV 140
           LRLH D +W ++ K + ++  TL   +T +  + W  H  V
Sbjct: 295 LRLHRDKQWAVQDK-RQVLQRTLTEMHTFIKHAEWWFHKDV 334


>01_02_0098 - 11087875-11089110,11091744-11092022
          Length = 504

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 316 RLPRSR-PTQSARTGQIASTVRRPADGS 236
           RLP+S+ P + AR  Q AS  RRP DG+
Sbjct: 12  RLPQSQAPRRQARGLQYASPERRPLDGA 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,718
Number of Sequences: 37544
Number of extensions: 247000
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)