Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P06
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.19 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   7.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
 Frame = +3

Query: 435 AXAAXPHXPXXLX--TXLGPXLXXPTAPXXPXPXGXXXXXVPXXTPPXPXXXXPPPALP 605
           A AA P  P      + L P    P  P  P P       +P   PP P    PPPA P
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS-SLPPPAQP 177



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +3

Query: 492 LXXPTAPXXPXPXGXXXXXVPXXTPPXPXXXXPPP 596
           L  P  P  P         +P   PP P    PPP
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
 Frame = +3

Query: 507  APXXPXPXGXXXXXVPXXTPPXP----XXXXPPPALPXXLSXXXXFPGP 641
            AP  P P       +P  TPP P         PP +P   S     P P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
 Frame = +3

Query: 486  PXLXXPTA--PXXPXPXGXXXXXVPXXTPPXPXXXXPPPALPXXLSXXXXFPGP 641
            P +  P++  P  P P G      P   PP P      P +P         P P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 350 QGCRRAPPPPLRSXISNLSN 291
           QG R  PPPP+ + I N+ N
Sbjct: 352 QGSRPPPPPPMPAPIYNVPN 371


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 19/83 (22%), Positives = 23/83 (27%)
 Frame = +3

Query: 483  GPXLXXPTAPXXPXPXGXXXXXVPXXTPPXPXXXXPPPALPXXLSXXXXFPGPXFXXHXL 662
            G  L    AP  P P        P   P        PPA    +S     P P       
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKE 1932

Query: 663  VDXXPSXLPSXPTXXXXSXKXXP 731
                 S +P+ P     + K  P
Sbjct: 1933 TAVPLSSMPNAPPSVASNAKLPP 1955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,756
Number of Sequences: 5004
Number of extensions: 17305
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)