Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P06
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.14
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.56
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.56
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 0.98
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 6.9
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 6.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 9.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 9.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 9.1
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.14
Identities = 27/83 (32%), Positives = 28/83 (33%)
Frame = +1
Query: 556 AXPPPXPXXXXPHRLYPXXXRXXXXSPXPVSXXTHSWTXXPPRSPRXQRXXXPXPKXXPX 735
A PPP P P R SP P T PPRSP +R P
Sbjct: 120 ASPPPPPP--------PRKSRAGGSSPPPPPPPRVPRTP-PPRSPPPRRPPMTPPS-PQR 169
Query: 736 XPXXXPXXPXPXRPXTXPXSPXP 804
P P P P P P SP P
Sbjct: 170 RPPRTPPSPEPRNPPRTPPSPIP 192
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +1
Query: 601 YPXXXRXXXXSPXPVSXXTHSWTXXPPRSPRXQRXXX--PXPKXXPXXPXXXPXX-PXPX 771
YP + P P H + PP PR R P P P P P P P
Sbjct: 100 YPVPGQEGHQVPAP-QHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPR 158
Query: 772 RPXTXPXSP 798
RP P SP
Sbjct: 159 RPPMTPPSP 167
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = -2
Query: 640 GPGKXXXXXRXXGRAGGGXXXXGXGGV--WXGTXXXXKPXGXGXXGAVGXXXWGPRXVSX 467
GPG G GGG G GG W G G G G G WG
Sbjct: 205 GPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWG-GPQQQ 263
Query: 466 XXGXWG 449
G WG
Sbjct: 264 QQGGWG 269
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = -2
Query: 640 GPGKXXXXXRXXGRAGGGXXXXGXGGV--WXGTXXXXKPXGXGXXGAVGXXXWGPRXVSX 467
GPG G GGG G GG W G G G G G WG
Sbjct: 243 GPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWG-GPQQQ 301
Query: 466 XXGXWG 449
G WG
Sbjct: 302 QQGGWG 307
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/64 (28%), Positives = 22/64 (34%)
Frame = +3
Query: 501 PTAPXXPXPXGXXXXXVPXXTPPXPXXXXPPPALPXXLSXXXXFPGPXFXXHXLVDXXPS 680
P P P P VP PP P P +P + P P F ++ P
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPP----PPPLFSPSMILPPPPP 1394
Query: 681 XLPS 692
LPS
Sbjct: 1395 PLPS 1398
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/86 (29%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Frame = -1
Query: 731 GXXFGXGXXXRWX-RGERGGXXVHEXVXXETGXGEXXXXRXXXG*SRWGXXXXGXGGGXA 555
G FG G R+ RG RGG + G G G R+G G GGG
Sbjct: 177 GGRFGGGGGDRFNDRGSRGGDR-YGGDRRGGGGGGGGDRYGGGGGDRYGGDRYGGGGGRR 235
Query: 554 GDAXXXXAXRXGXXXGXXXXXXGAKG 477
G R G G G G
Sbjct: 236 GSPDRRGGFRSGGGGGGYMRSGGGGG 261
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/80 (27%), Positives = 23/80 (28%)
Frame = +1
Query: 565 PPXPXXXXPHRLYPXXXRXXXXSPXPVSXXTHSWTXXPPRSPRXQRXXXPXPKXXPXXPX 744
PP P P +P S P T T P P R P P P
Sbjct: 441 PPPPPSAPPTIKFPI-------STGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVS 493
Query: 745 XXPXXPXPXRPXTXPXSPXP 804
P P P P P S P
Sbjct: 494 KSPPPPPPLPPIATPSSVPP 513
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Frame = +1
Query: 640 PVSXXTHSWTXXPPRSPRX-----QRXXXPXPKXXPXXPXXXPXXPXPXRPXTXPXSPXP 804
P+S T + PP +P+ R P P P P P P P P S P
Sbjct: 447 PISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 506
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 6.9
Identities = 27/110 (24%), Positives = 30/110 (27%), Gaps = 1/110 (0%)
Frame = +1
Query: 478 PLAPXXXXXXPXXXPXLXAXXXXASPAX-PPPXPXXXXPHRLYPXXXRXXXXSPXPVSXX 654
P AP P P L + A P PPP P P P P
Sbjct: 68 PPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPY---PQHAVPAPAPPPAPYPQHAVPA 124
Query: 655 THSWTXXPPRSPRXQRXXXPXPKXXPXXPXXXPXXPXPXRPXTXPXSPXP 804
+ PP P P P P P P P P +P P
Sbjct: 125 PAPYQQQPPPPP-------PPPHYPPPPPHYPPPPPAPHSAYIDHSAPRP 167
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = -2
Query: 604 GRAGGGXXXXGXGGV--WXGTXXXXKPXGXGXXGAVGXXXWGPRXVSXXXGXWG 449
G GGG G GG W G G G G G WG G WG
Sbjct: 254 GDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWG-GPQQQQQGGWG 306
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = -2
Query: 604 GRAGGGXXXXGXGGV--WXGTXXXXKPXGXGXXGAVGXXXWGPRXVSXXXGXWG 449
G GGG G GG W G G G G G WG G WG
Sbjct: 216 GDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWG-GPQQQQQGGWG 268
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = -2
Query: 604 GRAGGGXXXXGXGGV--WXGTXXXXKPXGXGXXGAVGXXXWGPRXVSXXXGXWG 449
G GGG G GG W G G G G G WG G WG
Sbjct: 254 GDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWG-GPQQQQQGGWG 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,171
Number of Sequences: 27780
Number of extensions: 137859
Number of successful extensions: 642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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