Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P04
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    97   3e-21
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    78   2e-15
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    46   8e-06
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    27   3.0  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.1  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   9.1  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
 Frame = -1

Query: 714 IXLXSIXVIAADGRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDILGFV 535
           + +  + ++     ++Y   VKP SPV D+ T++SGI    L   T    DVQ+ +   V
Sbjct: 282 LEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTV 341

Query: 534 GTDTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQR-G 358
             +T+L+GH+L +DL  LK  H  ++DT  +Y H RG P              R +Q+ G
Sbjct: 342 DNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAG 401

Query: 357 SNGHSPLEDARAAMDLVLLKVQQEQA 280
           + GH   EDA A +DL+ LKV+   A
Sbjct: 402 ALGHDSAEDALACVDLLKLKVKNGPA 427


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
 Frame = -1

Query: 708 LXSIXVIAADGRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDI--LGFV 535
           L  + V+A +  ++    +KP   ++  NTRFSGI       +  T   +   I  LG +
Sbjct: 398 LARLTVVAKES-IIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELG-M 455

Query: 534 GTDTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGS 355
             +TILIGH LENDL A++L+H  V+DT  L+ HARG P               T+Q  +
Sbjct: 456 NKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQ--T 513

Query: 354 NGHSPLEDARAAMDLVLLKVQQEQA 280
           + H   EDA +A+ LV  K +  ++
Sbjct: 514 STHDSEEDAVSALQLVFYKTKSNES 538


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
 Frame = -1

Query: 708 LXSIXVIAADGRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDILGFVGT 529
           L  + ++   G +VY + V+P   V D  T  SG+    + R   +   VQ ++   +  
Sbjct: 110 LARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHM-RDAPSFEKVQAEVAKILD- 167

Query: 528 DTILIGHALENDLRALKLLH-SAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSN 352
           + +L+GHA+ NDL+ L L H   ++   + +   R                       S 
Sbjct: 168 NRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSG 227

Query: 351 GHSPLEDARAAMDLVLLKVQQE 286
            HS ++DA+A M+L   KV++E
Sbjct: 228 QHSSVQDAQATMEL-YKKVKKE 248


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 422 NPRACGYKA-HVSTTALCNNFKARRSFSRACPIRIVSVPTNPSISFCTSRXVL-VARAKS 595
           N R  G+K  +V T+ L     A R  +    + ++  PTNP IS C  R ++ + R+K+
Sbjct: 113 NQRQYGFKVDNVDTSDLAAFEAALRPDTN---LVLIESPTNPRISICDIRAIVKITRSKA 169

Query: 596 R 598
           +
Sbjct: 170 K 170


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 339 MASDHCCLFVQYGPEAPRIGRVVIGALGILVRVDIK 446
           +AS  C +  Q    A  +GR ++G L  ++  D+K
Sbjct: 17  IASSGCNILGQPSSSAKSVGRAIVGGLESVLEWDLK 52


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 682 RWPSCIPITS 653
           +WP CIPITS
Sbjct: 48  KWPQCIPITS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,387
Number of Sequences: 5004
Number of extensions: 55930
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)