Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_P04
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447...   120   2e-27
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848...    69   4e-12
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254...    53   2e-07
05_01_0551 + 4827676-4829226                                           29   5.4  

>12_01_0552 +
           4469009-4469080,4470052-4470117,4470808-4470941,
           4471073-4471179,4471695-4471802,4471879-4471949,
           4472126-4472185,4472264-4472319,4472663-4472723,
           4472809-4473076,4473174-4473355,4473444-4473736,
           4474048-4474138
          Length = 522

 Score =  120 bits (288), Expect = 2e-27
 Identities = 55/139 (39%), Positives = 84/139 (60%)
 Frame = -1

Query: 708 LXSIXVIAADGRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDILGFVGT 529
           L  + ++   G +V   LVKP++P+ D+NTRFSGI    LA  T T +++Q + +G V  
Sbjct: 195 LTRVTLVDIKGEVVLDKLVKPANPITDYNTRFSGITAEMLADVTTTLQEIQEEFVGLVHK 254

Query: 528 DTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNG 349
           +T+L+GH+LENDL AL++ H  ++DT  LY H RG                R +Q   +G
Sbjct: 255 ETVLVGHSLENDLMALRISHDLIIDTAVLYKHNRGHRFKIALRVLAKKFLNREIQNTGSG 314

Query: 348 HSPLEDARAAMDLVLLKVQ 292
           H  +EDA+AA++L LLK++
Sbjct: 315 HDSVEDAKAALELALLKIK 333


>04_04_1390 -
           33184233-33184478,33184601-33184705,33184783-33184890,
           33184967-33185101,33185263-33185363,33185495-33185564,
           33185642-33185758,33186001-33186138,33186371-33186439,
           33186556-33186645,33186758-33186940,33187020-33187052
          Length = 464

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
 Frame = -1

Query: 708 LXSIXVIAADGRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDILGFVGT 529
           L  + V+ ++  +    LV P   V D+ T  +G+  +DL   T +  DVQ  +   +  
Sbjct: 160 LVRVCVVNSNLEVKLDELVNPLKAVADYRTSITGLSKKDLKGVTCSLVDVQKSLKKLLSK 219

Query: 528 DTILIGHALENDLRALKLLHSAVVDTCALYPHAR-GFPMXXXXXXXXXXXXXRTVQRGSN 352
             ILIGH+L  DL ALK  +S V+DT  ++ +A                     V+    
Sbjct: 220 GKILIGHSLSKDLHALKFDYSRVIDTAYIFKYANLPTTASASLNSLCKSVLGYAVREEGE 279

Query: 351 GHSPLEDARAAMDLVLLKVQ 292
            H+ L+DA AAM+LVL K++
Sbjct: 280 PHNCLKDAEAAMNLVLAKLK 299


>08_02_0490 -
           17724878-17725045,17725264-17725342,17725434-17725498,
           17725569-17725657,17725750-17725858,17725969-17726047,
           17727247-17727512
          Length = 284

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
 Frame = -1

Query: 678 GRLVYRSLVKPSSPVVDHNTRFSGIXPRDLARATKTXRDVQNDILGFVGTDTILIGHALE 499
           G +VY    +P   +VD+ T  SGI P+ + +A K    VQ D+   +    IL+GHAL 
Sbjct: 120 GNVVYDEYTRPVERIVDYRTHISGIRPKHMNKA-KDFWVVQKDVAELI-KGRILVGHALH 177

Query: 498 NDLRALKLLH--SAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNGHSPLEDAR 325
           +DL+ L L H    + DT + Y   R                   +Q+    H P+EDAR
Sbjct: 178 HDLKVLLLGHPKKDIRDT-SEYEVFRREGKRRSLKDLTAQVLGAKIQQ--KEHCPIEDAR 234

Query: 324 AAM 316
           AAM
Sbjct: 235 AAM 237


>05_01_0551 + 4827676-4829226
          Length = 516

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 498 NDLRALKLLHSAVVDTCALYPHA 430
           ++LRA   LH+AV++T  LYP A
Sbjct: 357 DELRAATYLHAAVLETLRLYPSA 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,787
Number of Sequences: 37544
Number of extensions: 357049
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)