Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P03
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 117 2e-27
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 112 5e-26
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 39 7e-04
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.7
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 9.3
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 117 bits (281), Expect = 2e-27
Identities = 59/101 (58%), Positives = 71/101 (70%)
Frame = -3
Query: 623 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P ++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LL
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180
Query: 443 AREVLRLRGVLPRDQRWDVVVDLFFYP*PLKKVKRMNNKPK 321
AREVLR+RG L R WDV+ DL+FY P ++V+R K
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDP-EEVEREEEAKK 220
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = -1
Query: 775 LEXPXDXFVI*SRPFGQRAVXKFPAHTXXYAYCGTFHTRCFINQIQAAFRD 623
+E P D V+ +R +G RAV KF AHT A G F F N I +R+
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 120
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 112 bits (270), Expect = 5e-26
Identities = 55/89 (61%), Positives = 64/89 (71%)
Frame = -3
Query: 623 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P +IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LL
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181
Query: 443 AREVLRLRGVLPRDQRWDVVVDLFFYP*P 357
AREVLRLRG + R W+V+ DL+FY P
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/51 (47%), Positives = 28/51 (54%)
Frame = -1
Query: 775 LEXPXDXFVI*SRPFGQRAVXKFPAHTXXYAYCGTFHTRCFINQIQAAFRD 623
+E P D VI SRP+G RAV KF AHT A G F F N I +R+
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 121
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 623 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P +++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 443 AR 438
+R
Sbjct: 240 SR 241
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 351 LQGSRVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 494
L G+RV +QI +P KH + F Q+ N VG GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 643 IQAAFRDLVX*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 467
++A FR + + +L+K + PLL + F LL + +TP DL+T L P +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780
Query: 466 LV 461
L+
Sbjct: 781 LL 782
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 458 MWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP 363
+WW L+R+ R L R +W V YP
Sbjct: 68 IWWSLSRKATRFYRWLSRSLKWRPVTYETVYP 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,563
Number of Sequences: 5004
Number of extensions: 58556
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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