Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P03
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 115 4e-26
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 114 6e-26
01_06_0867 - 32586254-32586574,32586756-32587172 30 2.4
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 28 9.6
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 9.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 115 bits (277), Expect = 4e-26
Identities = 52/102 (50%), Positives = 70/102 (68%)
Frame = -3
Query: 623 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P LI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLL
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLL 182
Query: 443 AREVLRLRGVLPRDQRWDVVVDLFFYP*PLKKVKRMNNKPKE 318
AR VL++RG + +WDV+VDLFFY P + ++ P +
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = -1
Query: 775 LEXPXDXFVI*SRPFGQRAVXKFPAHTXXYAYCGTFHTRCFINQIQAAFRD 623
+E P D V +RP+GQRAV KF +T +A G F NQ+Q +F +
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 114 bits (275), Expect = 6e-26
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = -3
Query: 623 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P LI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLL
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLL 182
Query: 443 AREVLRLRGVLPRDQRWDVVVDLFFYP*P 357
AR VL++RG + +WDV+VDLFFY P
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = -1
Query: 775 LEXPXDXFVI*SRPFGQRAVXKFPAHTXXYAYCGTFHTRCFINQIQAAFRD 623
+E P D V +RP+GQRAV KF +T +A G F NQ+Q +F +
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 336 HPFHFLQG--SRVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 506
H LQG S +E Q+ + AL + T PQHF QP H + + ++ V +D
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197
Query: 507 H 509
H
Sbjct: 198 H 198
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 321 LGLVVHPFHFLQGSRVEEQINHNIPALVTGKHT 419
LGLVV F+ L G R +NH +L+T K++
Sbjct: 311 LGLVVIVFYSLHGRRRISSMNHTDGSLITFKYS 343
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 352 FRGHG*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKP 465
FRG G ++ T ++RG R N NNH +P
Sbjct: 232 FRGRGGGGRTRGTGHGFARGGKYRGYNEDINNNHQNRP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,035
Number of Sequences: 37544
Number of extensions: 410381
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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