Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_P01
(736 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 252 5e-66
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 243 3e-63
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 216 5e-55
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 186 7e-46
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 165 1e-39
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 155 1e-36
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 140 3e-32
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 3e-24
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 112 7e-24
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 87 4e-16
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 82 2e-14
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 81 4e-14
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 81 4e-14
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 73 7e-12
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 72 1e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 72 2e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 71 4e-11
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 69 9e-11
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 66 8e-10
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 66 1e-09
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 57 5e-07
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 56 9e-07
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 52 1e-05
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 51 3e-05
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 45 0.002
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 5.5
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 7.3
UniRef50_Q4UFX6 Cluster: SfiI-subtelomeric related protein famil... 33 9.6
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 252 bits (618), Expect = 5e-66
Identities = 117/158 (74%), Positives = 131/158 (82%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KGYKGVTSRW KVACIGAWHP RV+F+VARAGQKGYHHRTE+NKK
Sbjct: 224 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKK 283
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
IY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G KKR
Sbjct: 284 IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 343
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQT 154
++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQT 381
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 243 bits (595), Expect = 3e-63
Identities = 110/158 (69%), Positives = 126/158 (79%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K +G KGVTSRW KVACIGAWHP RV ++ARAGQKGYHHRTE+NKK
Sbjct: 224 KGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKK 283
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I+RIG+G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G KKR
Sbjct: 284 IFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQT 154
+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQT 381
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 216 bits (527), Expect = 5e-55
Identities = 103/164 (62%), Positives = 122/164 (74%)
Frame = -2
Query: 618 GYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYR 439
G+KGVTSRW KVACIGAWHP RV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 179 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 238
Query: 438 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIIT 259
IG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+IT
Sbjct: 239 IGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLIT 295
Query: 258 LRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXQGCIHG 127
LRKSL TKR A EKINLK+IDTSSK GHGRFQT A + G
Sbjct: 296 LRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMG 339
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 186 bits (452), Expect = 7e-46
Identities = 88/158 (55%), Positives = 106/158 (67%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K G+ GV RW KVACIGAWHP RV +TVARAGQ GYHHRT +NKK
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKK 337
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
IY++G+ + + N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R
Sbjct: 338 IYQLGRAVSMEP-----NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRR 392
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQT 154
+ITLR+ + T R EKI LKFIDTSSK GHGRFQT
Sbjct: 393 VITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQT 430
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 165 bits (401), Expect = 1e-39
Identities = 86/158 (54%), Positives = 104/158 (65%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K GYKGVT R C+GAWHP RV+F+VA+ GQKGYHH + NKK
Sbjct: 204 KGNGYKGVT-RVDIQRNCPERPIEGCPKLCVGAWHPARVTFSVAQVGQKGYHHNGD-NKK 261
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + KK
Sbjct: 262 ICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKH 321
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQT 154
+T+ K L V T + AL+KI+ K DT+ K GHG FQT
Sbjct: 322 -LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQT 358
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 155 bits (376), Expect = 1e-36
Identities = 83/168 (49%), Positives = 110/168 (65%)
Frame = -2
Query: 660 KMK*LTALVSPKXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQK 481
+++ L + + K K YKG++S W + ACI W +VA A QK
Sbjct: 168 RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQK 221
Query: 480 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 301
G HH T +NKKIY+IGQG K+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM
Sbjct: 222 GCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVM 277
Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 157
+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ
Sbjct: 278 LKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQ 325
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 140 bits (339), Expect = 3e-32
Identities = 75/167 (44%), Positives = 100/167 (59%)
Frame = -2
Query: 648 LTALVSPKXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHH 469
+ A+ K G KGV SRW KVACIG W P RV++T++RAGQKGYH
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHK 258
Query: 468 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 289
RT NKKIY+IG +++ N+ S D KS+ MGGF +G +NND+++IKG
Sbjct: 259 RTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGS 312
Query: 288 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
G KR I LRK+++ EKI LK++DTSSK GHGR+++ A
Sbjct: 313 MTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSA 359
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 3e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 411 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 232
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 231 KRAALEK 211
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 112 bits (270), Expect = 7e-24
Identities = 62/157 (39%), Positives = 87/157 (55%)
Frame = -2
Query: 648 LTALVSPKXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHH 469
L + K KG +G RW KV IG WHP RV +TV AGQ G+HH
Sbjct: 219 LDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHH 278
Query: 468 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGC 289
RTE+NK++ IG+ +GK +K + +TE + ITP GGFPHYG V +DF+MI G
Sbjct: 279 RTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFPHYGIVRSDFMMIAGS 327
Query: 288 CMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 178
G KRII +R ++R K+ +++ + ++ SK
Sbjct: 328 VPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 87.0 bits (206), Expect = 4e-16
Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXK--VACIGAWHPXRVSFTVARAGQKGYHHRTEMN 454
K KG++G RW V IG W P V ++V GQ GYH RTE N
Sbjct: 203 KGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYN 262
Query: 453 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
K+I +IG NN ITP GGF HYG + N++V++KG GP
Sbjct: 263 KRILKIG------------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQGPA 302
Query: 273 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 172
KR+I LR+++R + ++ + +I T+SK G
Sbjct: 303 KRLIVLRRAIR--PQEPLIKVPEITYISTTSKQG 334
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 81.8 bits (193), Expect = 2e-14
Identities = 50/152 (32%), Positives = 75/152 (49%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KG++GV R+ ++ +G + V T+ +AGQ GYH RTE+NK+
Sbjct: 228 KGKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKR 287
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I RI E +TP GGF HYGEV N +++++G GP KR
Sbjct: 288 ILRISNP-------------------GESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKR 328
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 172
++ R +R HT + ++L ++ TSSK G
Sbjct: 329 LLRFRDPVRPHTN---VFDVDLTYVSTSSKQG 357
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 80.6 bits (190), Expect = 4e-14
Identities = 45/125 (36%), Positives = 68/125 (54%)
Frame = -2
Query: 546 VACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 367
V +G W+P R+ + V + GQ GYH RTE NK+I ++G D +
Sbjct: 235 VGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKA 275
Query: 366 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 187
E+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EE-ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLST 332
Query: 186 SSKFG 172
SK G
Sbjct: 333 QSKMG 337
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 80.6 bits (190), Expect = 4e-14
Identities = 50/131 (38%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXK--VACIGAWHPXRVSFTVARAGQKGYHHRTEMN 454
K KG++GV RW + IG P RV +TV AGQ GYH RTE N
Sbjct: 209 KGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHN 268
Query: 453 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
K+I +IG+ DG + +TP GGF +YG V D++MI G GPK
Sbjct: 269 KRILKIGE-----DG---------------EEVTPRGGFVNYGVVRGDYIMIHGTVPGPK 308
Query: 273 KRIITLRKSLR 241
KR+I +R ++R
Sbjct: 309 KRLIRVRPAVR 319
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 72.9 bits (171), Expect = 7e-12
Identities = 51/152 (33%), Positives = 72/152 (47%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K G +GV R+ ++ +G + V T+ +AGQ GYH RTE NK+
Sbjct: 208 KGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKR 267
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I RI A E E ITP GGF HYGEV N +++I+G GP KR
Sbjct: 268 ILRI---------------AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKR 308
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 172
+I R + R R +++ ++ T+SK G
Sbjct: 309 LIRFRDAAR---PRREQPPVDITYVSTASKQG 337
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 72.1 bits (169), Expect = 1e-11
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXK--VACIGAWHPXRVSFTVARAGQKGYHHRTEMN 454
K KG +G RW + + +G W+P RV TV + GQ GYH RTE+N
Sbjct: 205 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 264
Query: 453 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
K++ I G TP GGFP+YGEV+ + ++KG GP+
Sbjct: 265 KRLIDINDG---------------------DEPTPDGGFPNYGEVDGPYTLVKGSVPGPE 303
Query: 273 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 172
+R++ R ++R + + L+ ++++ T+S G
Sbjct: 304 QRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQG 335
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 71.7 bits (168), Expect = 2e-11
Identities = 44/129 (34%), Positives = 63/129 (48%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KG++GV RW +V +G P V +TV RAGQ G+H R E +K+
Sbjct: 204 KGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKR 263
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I +G +T+ D + I P GGF H+G V DF+++KG G +R
Sbjct: 264 IMIMG---------------NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRR 306
Query: 267 IITLRKSLR 241
+I LR +R
Sbjct: 307 LIKLRSQIR 315
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 70.5 bits (165), Expect = 4e-11
Identities = 48/152 (31%), Positives = 67/152 (44%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KG+ G R+ + +G WHP V TV +AGQ GY RT N +
Sbjct: 199 KGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVR 258
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ + +G +A T I GGF HYG V ND+V++ G GP KR
Sbjct: 259 VLKYSKG----------EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKR 300
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFG 172
+I +R R K ++ + L +I SK G
Sbjct: 301 LIKMRDPAR--QKVPDIDNVKLDYISLESKQG 330
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 69.3 bits (162), Expect = 9e-11
Identities = 42/140 (30%), Positives = 65/140 (46%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KG++GV R ++ +G P V +TV RAGQ G+H R E NK+
Sbjct: 202 KGKGWQGVIQRMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKR 261
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I +G G+ + +I P GG+ H+G V D++++KG G +R
Sbjct: 262 IMAVGSA-----GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRR 303
Query: 267 IITLRKSLRVHTKRAALEKI 208
++ LR +R KR + I
Sbjct: 304 LVKLRAQIRNAPKRTSKPNI 323
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 66.1 bits (154), Expect = 8e-10
Identities = 47/150 (31%), Positives = 72/150 (48%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKK 448
K KG++GV R+ KV IG+ P R+ TV GQ GYH RTE NK
Sbjct: 196 KGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKL 255
Query: 447 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
I +IG+ ++ + GG+ YG+V +++KG GP+KR
Sbjct: 256 IIKIGEPLNVE-----------------------GGWVRYGQVIGPTILLKGSVPGPRKR 292
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSK 178
+I LR+++R K+ +E +++I S K
Sbjct: 293 LIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = -2
Query: 285 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQT 154
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQT 131
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 56.8 bits (131), Expect = 5e-07
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXK--VACIGAWHPXRVSFTVARAGQKGYHHRTEMN 454
K KG++G R+ + +G P + F GQ G+H RTE N
Sbjct: 201 KGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYN 259
Query: 453 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
K+I ++G D + S K I P GG+PHYG V + F++++G G
Sbjct: 260 KRILKVG------DAE------------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAV 301
Query: 273 KRIITLRKSLR 241
KR++ LR ++R
Sbjct: 302 KRLVRLRHAIR 312
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 56.0 bits (129), Expect = 9e-07
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSF-TVARAGQKGYHHRTEMNK 451
K KG++GV RW IGA R +F +AGQ G+H RTE NK
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGSRR-IGARSHGRSTFWETPQAGQTGFHRRTEYNK 268
Query: 450 KIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKK 271
+I I +K +TP GGF YG V + FVM+ G G K
Sbjct: 269 RILMIDDDGYK--------------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308
Query: 270 RIITLRKSLRVHT--KRAALEKINLKFIDTSSKFG 172
R I +R ++R + + K + +I +SK G
Sbjct: 309 RPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/83 (38%), Positives = 42/83 (50%)
Frame = -2
Query: 489 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 310
GQ G+H RTE NK+I +IG K I P GGF YG V N
Sbjct: 268 GQLGFHRRTEYNKRIIKIGD--------------------EPKEINPAGGFVRYGIVRNT 307
Query: 309 FVMIKGCCMGPKKRIITLRKSLR 241
+V+++G +G KKR I LR+ +R
Sbjct: 308 YVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 51.2 bits (117), Expect = 3e-05
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGAWHPXRVSFT-VARAGQKGYHHRTEMNK 451
K KG++GV R+ IG+ P + + + GQ G+H RTE NK
Sbjct: 264 KGKGFQGVIKRFGVKELPRWHKHRKGSRK-IGSRSPGFGTMSETPQPGQMGFHRRTEYNK 322
Query: 450 KIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKK 271
+I +IG ++ +TP GGF YG V ++M+ G +GP+K
Sbjct: 323 RIIKIG--------------------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIGPRK 362
Query: 270 RIITLRKSLR 241
R++ LR +R
Sbjct: 363 RLLVLRHPIR 372
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 44.8 bits (101), Expect = 0.002
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = -2
Query: 627 KXKGYKGVTSRWXXXXXXXXXXXXXXKVACIGA--WHPXRVSFTVARAGQKGYHHRTEMN 454
K KG++GV R+ +GA W S+ V + GQ GYH RT+ N
Sbjct: 227 KGKGFQGVIKRFGVKELPKWHKHRKGSRR-VGARSWGKGTSSY-VPQPGQMGYHRRTDYN 284
Query: 453 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
K++ I K I GG+ HYG V + +V++KG GP
Sbjct: 285 KRVLMISDDPSK--------------------INVEGGWLHYGLVKSKYVVLKGSVFGPP 324
Query: 273 KRIITLRKSLR 241
KR I +R +R
Sbjct: 325 KRPIIMRLPVR 335
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 35.1 bits (77), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 256 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLS 435
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 436 NTIDFLVHFSTVMITFLTST 495
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 444 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 265
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 264 ITLRKSLR 241
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 5.5
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -2
Query: 486 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 307
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 306 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 217
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 7.3
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 324 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 199
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
>UniRef50_Q4UFX6 Cluster: SfiI-subtelomeric related protein family
member, putative; n=1; Theileria annulata|Rep:
SfiI-subtelomeric related protein family member,
putative - Theileria annulata
Length = 2345
Score = 32.7 bits (71), Expect = 9.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 634 HQCSQSFHLGANTESTGIGSPNVLW 708
++C+Q+F + ES IGSPNV+W
Sbjct: 434 YKCNQNFEIDRVIESKKIGSPNVIW 458
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,145,580
Number of Sequences: 1657284
Number of extensions: 14830966
Number of successful extensions: 34044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34013
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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