Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_O24
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.53 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   3.8  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   5.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.0  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -2

Query: 595 RGXXXGSXGGGXRGEXGEGXTXEGGRWXGRXXRXGDWXGGXXXSRGG 455
           RG   G  GG   G  G      GGR   R  R G   GG   ++GG
Sbjct: 25  RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGS-SGGRGGAKGG 70



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -3

Query: 696 GGXXGVGGERGXXRXXGTGXXXKXGXGGER-XXGGEGXXRXRXGXEXGGK 550
           GG  G  G RG     G G     G GG R   GG G  R   G   GG+
Sbjct: 16  GGRGGFNGGRGGF-GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 614 ARGGXEERGXXGXGRGXXEGGXGG 543
           ARGG   RG    GRG   GG GG
Sbjct: 43  ARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -2

Query: 580 GSXGG--GXRGEXGEGXTXEGGRWXGRXXRXGDWXGGXXXSRGG 455
           GS GG  G RG  G      GG   GR    G   GG    RGG
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = -1

Query: 605 GXEERGXXGXGRGXXEGGXGGGXYXXGGEVXREXIXXGGLXGG 477
           G    G  G GRG   GG GG     GG         GG  GG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG-GRGGAKGG 70



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = -3

Query: 696 GGXXGVGGERGXXRXXGTGXXXKXGXGGERXXGGEGXXRXRXGXEXGGK 550
           G   G GG RG       G     G  G    GG G  R   G   G +
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGAR 54


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -1

Query: 638 RXRRXXKXARGGXEERGXXGXGRGXXEGGXGGG 540
           R  R     RGG   RG  G GRG   GG   G
Sbjct: 450 RGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 798 PXXPPPSPTTXXXXFRGXPLAPSFTRSXLXSSXS 899
           P   P  P+T    F   PL PSF+   + SS S
Sbjct: 150 PSQLPVRPSTSLSFFDDIPLGPSFSAETILSSLS 183


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -3

Query: 702 GXGGXXGVGGERGXXRXXGTGXXXKXGXGGERXXGGEGXXR--XRXGXEXGGK 550
           G GG  G  G RG  R  G G   + G GG    G  G  R   R G   G +
Sbjct: 136 GRGGRGGFRGGRGGSR-GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = -1

Query: 620 KXARGGXEERGXXGX---GRGXXEGGXGGGXYXXGGEVXREXIXXGGLXGG 477
           K AR G   RG  G    GRG   GG GG      G   R     GG  GG
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGF-GGGSRGG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,334
Number of Sequences: 5004
Number of extensions: 21540
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)