Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_O20
         (1050 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   6.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   6.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   6.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   6.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   6.0  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 85  FRXGGPPKGLXRXEPPRLFSF 23
           FR  GPP    R  PP  + F
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRF 395


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 85  FRXGGPPKGLXRXEPPRLFSF 23
           FR  GPP    R  PP  + F
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRF 395


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 85  FRXGGPPKGLXRXEPPRLFSF 23
           FR  GPP    R  PP  + F
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRF 395


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 85  FRXGGPPKGLXRXEPPRLFSF 23
           FR  GPP    R  PP  + F
Sbjct: 364 FRYIGPPTSFPRFIPPNAYRF 384


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 85  FRXGGPPKGLXRXEPPRLFSF 23
           FR  GPP    R  PP ++ F
Sbjct: 367 FRYIGPPTPFPRFIPPNVYRF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,702
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34945290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)